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LacPavin_0818_WC40_scaffold_120392_prodigal-single.1__X__X__00108
Bact-VirLacPavin_0818_WC40_scaffold_120392_prodigal-single.1__X__X__00108
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-99
Domain cluster:
rep: KF147891.1__AGS81953.1__PaBG_00069__00069__D24-99
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4anjA06 | 1.20.5.4820 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.61 | 46.0 | 4.17e-01 | 82.5% | 81.4% |
| 1i8dC02 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.52 | 37.0 | 3.67e-01 | 76.2% | 87.5% |
| 1lzwA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.52 | 33.0 | 3.19e-01 | 71.2% | 56.0% |
| 1s79A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 34.0 | 3.23e-01 | 77.5% | 53.4% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5004560 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 60.0 | 7.13e-01 | 72.5% | 100.0% |
| 3587382 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 57.0 | 6.76e-01 | 72.5% | 100.0% |
| 2895417 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.81 | 55.0 | 5.61e-01 | 71.2% | 72.7% |
| 3190345 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.80 | 53.0 | 6.23e-01 | 75.0% | 98.2% |
| 2809236 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.77 | 55.0 | 6.19e-01 | 75.0% | 96.8% |
| 4995817 | 101.15.1.4 ↗ | alpha arrays › HTH › LysM domain › LysM domain › Phage_gp53 | 0.77 | 63.0 | 6.74e-01 | 90.0% | 100.0% |
| 3375189 | 101.15.1.10 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP | 0.71 | 54.0 | 5.79e-01 | 81.2% | 92.9% |
| 3611431 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.68 | 46.0 | 5.21e-01 | 70.0% | 95.0% |
| 3811719 | 101.15.1.9 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_CERK1_LYK3_4_5 | 0.68 | 52.0 | 4.20e-01 | 81.2% | 91.3% |
| 3838186 | 101.15.1.12 ↗ | alpha arrays › HTH › LysM domain › LysM domain › PF30403 | 0.64 | 44.0 | 4.44e-01 | 75.0% | 71.2% |
| 3585157 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.59 | 37.0 | 4.06e-01 | 83.7% | 76.9% |
| 3887515 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.57 | 38.0 | 3.68e-01 | 72.5% | 60.0% |
| 3378851 | 304.7.1.2 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 | 0.52 | 36.0 | 3.67e-01 | 72.5% | 72.5% |
| 3483529 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 37.0 | 3.49e-01 | 76.2% | 60.0% |
| 4934724 | 300.1.1.6 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB | 0.50 | 39.0 | 3.37e-01 | 90.0% | 92.4% |
| 5071253 | 300.1.1.6 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB | 0.50 | 39.0 | 3.37e-01 | 88.7% | 97.9% |