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LacPavin_0818_WC40_scaffold_120392_prodigal-single.1__X__X__00124
Bact-VirLacPavin_0818_WC40_scaffold_120392_prodigal-single.1__X__X__00124
Identity
- Kingdom:
- phage
Quality
82.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 469-549
Domain cluster:
rep: gwa1_scaffold_1_prodigal-single.1__X__X__00237__D109-187
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mi8A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.87 | 81.0 | 6.63e-01 | 100.0% | 59.6% |
| 4lx3A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.87 | 81.0 | 7.46e-01 | 100.0% | 83.2% |
| 6zgqA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.84 | 78.0 | 6.26e-01 | 100.0% | 56.5% |
| 2imzA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.82 | 75.0 | 6.18e-01 | 100.0% | 59.9% |
| 3c7fA02 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 43.0 | 2.92e-01 | 100.0% | 91.9% |
| 6lf2B01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 38.0 | 3.46e-01 | 86.4% | 93.5% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2445477 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.88 | 81.0 | 6.44e-01 | 100.0% | 54.5% |
| 4779324 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.87 | 81.0 | 7.46e-01 | 100.0% | 83.2% |
| 4945569 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.87 | 81.0 | 6.38e-01 | 100.0% | 54.8% |
| 4993871 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.86 | 80.0 | 7.02e-01 | 100.0% | 74.8% |
| 4975578 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.86 | 80.0 | 5.36e-01 | 100.0% | 37.8% |
| 3495262 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.85 | 80.0 | 5.99e-01 | 100.0% | 51.1% |
| 3952464 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.85 | 79.0 | 6.40e-01 | 100.0% | 58.6% |
| 5065932 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.85 | 79.0 | 6.45e-01 | 100.0% | 59.3% |
| 3282306 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.85 | 79.0 | 6.53e-01 | 100.0% | 63.0% |
| 5002632 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.85 | 79.0 | 6.32e-01 | 100.0% | 61.7% |
| 4978364 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.85 | 77.0 | 6.83e-01 | 100.0% | 93.0% |
| 5028788 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.84 | 79.0 | 6.42e-01 | 100.0% | 61.4% |
| 4821446 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.84 | 78.0 | 6.72e-01 | 100.0% | 90.8% |
| 4970868 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.84 | 77.0 | 6.58e-01 | 100.0% | 91.2% |
| 3230518 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.82 | 76.0 | 6.03e-01 | 100.0% | 63.2% |
| 4127166 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.80 | 74.0 | 5.94e-01 | 100.0% | 54.7% |
| 4932851 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.74 | 66.0 | 5.61e-01 | 100.0% | 60.0% |
D2
medium
residues 19-99_236-277
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07733.19 best | DNA_pol3_alpha | 83.1 | 3.50e-23 | 95.1% | 33.1% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4064450 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.89 | 63.0 | 4.69e-01 | 72.4% | 76.7% |
| 1117589 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.89 | 64.0 | 4.55e-01 | 74.0% | 66.3% |
| 4142452 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.87 | 62.0 | 4.74e-01 | 73.2% | 74.8% |
| 4156755 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.87 | 62.0 | 4.94e-01 | 73.2% | 76.4% |
| 4660116 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.86 | 63.0 | 4.65e-01 | 75.6% | 75.4% |
| 5078968 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.82 | 55.0 | 4.17e-01 | 70.7% | 32.9% |
| 3596685 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.53 | 32.0 | 2.51e-01 | 78.0% | 27.5% |
| 4954525 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.52 | 30.0 | 3.40e-01 | 78.9% | 75.6% |
| 4951676 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.51 | 33.0 | 3.88e-01 | 97.6% | 96.5% |
| 3711262 | 3261.1.1.0 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb | 0.50 | 30.0 | 3.41e-01 | 74.8% | 80.0% |
D3
medium
residues 100-235
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07733.19 best | DNA_pol3_alpha | 55.9 | 7.40e-15 | 97.8% | 44.2% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5dvwA00 | 1.20.120.1160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.54 | 35.0 | 3.55e-01 | 86.0% | 65.9% |
| 2kzcA00 | 1.10.790.20 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Domain of unknown function DUF1476 | 0.52 | 33.0 | 3.85e-01 | 81.6% | 98.8% |
| 1x62A01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.50 | 17.0 | 2.38e-01 | 95.6% | 55.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3969389 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.84 | 71.0 | 5.50e-01 | 100.0% | 43.6% |
| 4660116 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.83 | 70.0 | 5.38e-01 | 100.0% | 42.9% |
| 4142452 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.82 | 58.0 | 4.66e-01 | 100.0% | 39.6% |
| 1117589 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.81 | 68.0 | 5.04e-01 | 100.0% | 37.8% |
| 4064450 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.79 | 66.0 | 5.15e-01 | 100.0% | 44.1% |
| 3713186 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 36.0 | 2.46e-01 | 75.0% | 42.2% |
D4
medium
residues 278-357
Domain cluster:
rep: MK994522__QGH71213.1__X__00057__D648-728
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17657.7 best | DNA_pol3_finger | 70.4 | 1.60e-19 | 100.0% | 47.0% |
D5
medium
residues 358-460
Domain cluster:
rep: IMGVR_UViG_3300008004_000605-3300008004-Ga0100395_100035234__D688-761
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17657.7 best | DNA_pol3_finger | 43.2 | 3.70e-11 | 59.2% | 30.7% |