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LacPavin_0818_WC40_scaffold_120392_prodigal-single.1__X__X__00138

Bact-Vir

LacPavin_0818_WC40_scaffold_120392_prodigal-single.1__X__X__00138

Identity

Kingdom:
phage

Quality

74.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-58
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.69 61.0 4.37e-01 100.0% 47.2%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.69 56.0 3.64e-01 90.9% 21.7%
3cu3A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 59.0 4.22e-01 100.0% 72.8%
3es4A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 55.0 4.36e-01 92.7% 87.9%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 58.0 4.55e-01 100.0% 95.0%
4o3vA00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.66 57.0 4.30e-01 100.0% 87.7%
3rgaA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 55.0 4.28e-01 100.0% 85.7%
3o2uA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.65 57.0 4.10e-01 100.0% 38.9%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.65 58.0 3.65e-01 100.0% 25.8%
3bgaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.64 57.0 3.63e-01 100.0% 37.4%
8djfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.64 55.0 3.54e-01 100.0% 36.3%
1tuhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 56.0 4.27e-01 100.0% 82.4%
3we5A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.63 55.0 4.11e-01 100.0% 41.1%
6iw2A01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.62 54.0 4.11e-01 98.2% 48.1%
6krwA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.62 55.0 3.48e-01 100.0% 26.6%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 55.0 4.11e-01 100.0% 49.6%
3hrdC02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.62 51.0 4.19e-01 98.2% 63.7%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 55.0 4.11e-01 100.0% 50.7%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.61 54.0 3.41e-01 98.2% 25.8%
2f4wB00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.61 55.0 3.94e-01 100.0% 38.2%
1yvuA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 47.0 3.24e-01 89.1% 94.4%
4h61A00 3.10.450.580 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mediator complex, subunit Med6 0.60 53.0 3.96e-01 100.0% 65.0%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.60 48.0 4.13e-01 100.0% 55.4%
5b4wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 51.0 3.04e-01 100.0% 35.0%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.58 47.0 3.64e-01 89.1% 42.4%
4hg1A00 3.40.1580.30 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › Domain of unknown function (DUF5066) 0.58 49.0 3.29e-01 96.4% 56.8%
1e25A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 48.0 3.13e-01 98.2% 25.2%
4hqnA01 2.20.100.10 Mainly Beta › Single Sheet › TSP-1 type 1 repeat › Thrombospondin type-1 (TSP1) repeat 0.56 38.0 3.69e-01 80.0% 61.5%
3mqzA00 3.30.930.20 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Protein of unknown function DUF1054 0.55 46.0 3.23e-01 100.0% 58.0%
4hljA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.26e-01 80.0% 59.8%
6lbtA01 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 42.0 3.17e-01 85.5% 59.9%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 45.0 4.33e-01 96.4% 89.4%
2e50B02 3.30.1120.90 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Nucleosome assembly protein 0.54 44.0 3.63e-01 96.4% 63.1%
7bvaA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.54 44.0 3.03e-01 96.4% 34.1%
2xxpA02 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.54 47.0 3.03e-01 100.0% 82.2%
1yf9A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.54 44.0 3.33e-01 100.0% 39.9%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 41.0 2.51e-01 90.9% 40.2%
1fumA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 42.0 2.64e-01 90.9% 58.0%
1ciyA02 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.51 40.0 2.82e-01 90.9% 90.8%
3vmaA03 3.30.2060.10 Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain 0.51 44.0 3.79e-01 100.0% 64.4%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 42.0 3.13e-01 98.2% 41.4%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3226799 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.68 61.0 3.78e-01 100.0% 25.0%
3845007 5.1.5.183 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, DUF4800, NBCH_WD40 0.68 59.0 3.56e-01 100.0% 22.3%
3234110 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.68 60.0 4.12e-01 100.0% 39.0%
3281942 222.1.1.24 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › AfsA 0.68 56.0 3.91e-01 90.9% 69.7%
3961375 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.68 60.0 4.00e-01 100.0% 32.9%
3233978 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.67 58.0 3.66e-01 98.2% 24.7%
4953226 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.66 50.0 4.71e-01 81.8% 67.7%
3213198 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.65 57.0 3.55e-01 98.2% 27.0%
3227147 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.65 57.0 3.54e-01 100.0% 29.5%
3500787 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.64 58.0 3.65e-01 100.0% 25.0%
4945115 4252.1.1.10 beta barrels › AttH-like › AttH-like › AttH-like › DUF2804 0.64 52.0 3.97e-01 90.9% 46.2%
3382308 2004.1.1.21 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA 0.64 53.0 3.33e-01 92.7% 75.3%
3479746 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.64 57.0 3.55e-01 100.0% 24.3%
3991840 389.1.2.0 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.63 52.0 4.73e-01 92.7% 69.3%
3270561 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.63 56.0 3.54e-01 100.0% 25.5%
3327282 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.63 56.0 3.54e-01 100.0% 34.6%
4361190 883.1.1.18 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › PF26545 0.63 54.0 3.88e-01 100.0% 65.7%
3628139 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.63 51.0 3.72e-01 100.0% 31.9%
3484105 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.63 53.0 3.97e-01 98.2% 62.0%
3924294 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.63 55.0 3.42e-01 98.2% 25.6%
3834843 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.63 56.0 3.45e-01 100.0% 25.1%
3577945 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.62 50.0 4.22e-01 100.0% 51.0%
None 0.62 55.0 3.46e-01 100.0% 25.8%
3243901 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.62 54.0 3.37e-01 98.2% 23.5%
3188325 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.61 49.0 3.57e-01 100.0% 30.0%
3923085 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.61 54.0 3.36e-01 98.2% 23.3%
3234839 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.61 55.0 3.38e-01 98.2% 31.3%
3936843 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.61 54.0 3.35e-01 98.2% 23.8%
4670128 5087.3.1.1 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht 0.61 50.0 3.44e-01 100.0% 28.8%
3932433 5.1.4.267 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF28639 0.61 49.0 2.91e-01 89.1% 12.4%
3782417 883.1.1.18 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › PF26545 0.61 53.0 3.70e-01 100.0% 61.6%
3244242 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.61 54.0 3.33e-01 100.0% 24.9%
3936087 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.61 54.0 3.29e-01 98.2% 22.7%
3626637 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.61 54.0 3.35e-01 100.0% 23.7%
11164 2484.1.1.26 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.60 47.0 3.23e-01 89.1% 93.5%
1064503 216.1.1.1 a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.60 53.0 3.77e-01 100.0% 37.6%
1491757 719.1.1.3 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PAXX 0.59 45.0 4.69e-01 98.2% 92.0%
3213693 243.1.1.75 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 0.59 52.0 3.87e-01 98.2% 90.4%
1320520 243.16.1.1 a+b two layers › Cystatin-like › hypothetical protein CLOLEP_02462 › hypothetical protein CLOLEP_02462 › DUF6836 0.58 50.0 4.14e-01 100.0% 71.3%
3925311 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.58 49.0 2.98e-01 100.0% 26.2%
3235792 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.56 45.0 2.91e-01 98.2% 25.2%
4027776 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 46.0 2.95e-01 100.0% 30.0%
3651629 708.1.1.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.56 49.0 3.91e-01 100.0% 67.3%
3580428 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 39.0 3.84e-01 78.2% 78.3%
3943569 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.54 46.0 3.38e-01 98.2% 43.6%
4126991 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 47.0 4.01e-01 100.0% 83.3%
5018173 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 45.0 3.81e-01 100.0% 79.0%
3579141 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 43.0 2.77e-01 98.2% 25.8%
3432857 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.53 46.0 3.50e-01 100.0% 41.5%
3731902 304.107.1.7 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › POP1_N+POPLD 0.53 43.0 2.62e-01 96.4% 13.6%
5060158 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.52 42.0 3.10e-01 90.9% 66.7%
3581460 2007.2.3.21 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK 0.52 42.0 2.76e-01 100.0% 24.3%
5059776 2003.1.3.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.51 40.0 2.53e-01 90.9% 30.1%
3594583 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.51 41.0 3.16e-01 100.0% 56.0%