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LacPavin_0818_WC40_scaffold_120392_prodigal-single.1__X__X__00141
Bact-VirLacPavin_0818_WC40_scaffold_120392_prodigal-single.1__X__X__00141
Identity
- Kingdom:
- phage
Quality
77.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-71
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gu3A01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.74 | 48.0 | 4.67e-01 | 89.7% | 60.0% |
| 2x2sC00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.69 | 60.0 | 4.51e-01 | 100.0% | 95.9% |
| 1d0dA00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.65 | 34.0 | 3.40e-01 | 70.7% | 45.0% |
| 1r8nA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.62 | 50.0 | 3.58e-01 | 91.4% | 44.9% |
| 1eqtA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.61 | 44.0 | 4.27e-01 | 94.8% | 68.7% |
| 1dgsA04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 41.0 | 3.91e-01 | 72.4% | 69.9% |
| 1nr4C00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 44.0 | 4.24e-01 | 94.8% | 69.7% |
| 4az3A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.59 | 47.0 | 3.11e-01 | 89.7% | 39.4% |
| 6qpwA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 43.0 | 3.23e-01 | 100.0% | 30.1% |
| 1zkpC00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.58 | 37.0 | 2.47e-01 | 84.5% | 15.1% |
| 1wuoA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.57 | 46.0 | 3.14e-01 | 91.4% | 88.1% |
| 3hx1B00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.56 | 47.0 | 3.96e-01 | 96.6% | 75.5% |
| 3n8bA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 47.0 | 4.33e-01 | 94.8% | 81.3% |
| 1lckA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 48.0 | 4.78e-01 | 100.0% | 93.2% |
| 2yz0A00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.56 | 43.0 | 3.35e-01 | 87.9% | 41.3% |
| 3kulA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 43.0 | 3.78e-01 | 86.2% | 86.5% |
| 1uv4A00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 43.0 | 2.84e-01 | 89.7% | 52.9% |
| 2rqrA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 47.0 | 3.75e-01 | 100.0% | 47.1% |
| 3g8yA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 43.0 | 2.64e-01 | 89.7% | 24.3% |
| 2g1lA00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.54 | 44.0 | 3.79e-01 | 96.6% | 71.8% |
| 4hcsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 41.0 | 3.96e-01 | 89.7% | 73.1% |
| 1a15A00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 37.0 | 3.66e-01 | 94.8% | 65.7% |
| 1ub1A00 | 3.30.890.10 | Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A | 0.53 | 42.0 | 3.43e-01 | 93.1% | 59.2% |
| 2v79A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 36.0 | 2.93e-01 | 70.7% | 61.7% |
| 7k7jA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 41.0 | 2.91e-01 | 84.5% | 89.7% |
| 1jegA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 44.0 | 4.41e-01 | 100.0% | 93.3% |
| 6ruiB04 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.52 | 44.0 | 3.18e-01 | 100.0% | 69.2% |
| 5aj3E01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.52 | 43.0 | 3.93e-01 | 96.6% | 88.9% |
| 4d4rB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 41.0 | 3.62e-01 | 91.4% | 84.4% |
| 3dorA03 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.52 | 39.0 | 2.56e-01 | 82.8% | 90.6% |
| 1icwB00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 38.0 | 3.70e-01 | 94.8% | 74.2% |
| 1rypC00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.51 | 44.0 | 2.95e-01 | 100.0% | 37.7% |
| 7ob9B01 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.51 | 42.0 | 3.04e-01 | 100.0% | 64.6% |
| 1vwxY00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 41.0 | 3.20e-01 | 100.0% | 40.3% |
| 3f1jA00 | 2.70.20.40 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Borna disease virus, matrix protein | 0.50 | 39.0 | 3.05e-01 | 89.7% | 75.7% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4961814 | 375.1.1.341 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7568 | 0.66 | 44.0 | 5.07e-01 | 82.8% | 100.0% |
| 3355871 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.64 | 55.0 | 3.49e-01 | 100.0% | 33.8% |
| 3346241 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.64 | 41.0 | 4.35e-01 | 91.4% | 76.0% |
| 4089268 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.64 | 42.0 | 3.64e-01 | 72.4% | 44.4% |
| 3402045 | 220.1.1.158 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 | 0.63 | 57.0 | 4.63e-01 | 100.0% | 80.0% |
| 3548416 | 220.1.1.158 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 | 0.63 | 55.0 | 4.38e-01 | 100.0% | 76.7% |
| 2136 | 6.1.1.2 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Kunitz_legume | 0.62 | 50.0 | 3.58e-01 | 91.4% | 44.9% |
| 4929323 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 54.0 | 4.39e-01 | 100.0% | 79.1% |
| 3880422 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.61 | 45.0 | 4.29e-01 | 94.8% | 67.6% |
| 3828070 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.61 | 42.0 | 4.28e-01 | 96.6% | 76.4% |
| 3912274 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.60 | 44.0 | 4.21e-01 | 94.8% | 67.1% |
| 3523646 | 6.1.1.11 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin | 0.60 | 51.0 | 4.07e-01 | 100.0% | 99.2% |
| 3702281 | 375.8.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta | 0.59 | 43.0 | 4.39e-01 | 87.9% | 81.8% |
| 3520893 | 109.4.1.1812 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RYDR_ITPR, RIH_assoc | 0.58 | 48.0 | 2.56e-01 | 93.1% | 5.5% |
| 4029544 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 47.0 | 3.61e-01 | 89.7% | 55.0% |
| 3896688 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.58 | 41.0 | 4.15e-01 | 94.8% | 76.7% |
| 3410484 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.58 | 52.0 | 3.84e-01 | 100.0% | 63.2% |
| 5076110 | 304.136.1.1 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SBP_bac_5 | 0.57 | 46.0 | 3.50e-01 | 91.4% | 63.9% |
| 3216019 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 50.0 | 4.90e-01 | 100.0% | 95.4% |
| 3485745 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.56 | 50.0 | 4.94e-01 | 100.0% | 93.3% |
| 3652949 | 5.1.5.85 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_RFWD3 | 0.56 | 50.0 | 3.13e-01 | 100.0% | 30.7% |
| 3466470 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 49.0 | 3.80e-01 | 100.0% | 67.7% |
| 5004816 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.56 | 46.0 | 3.39e-01 | 98.3% | 49.7% |
| 3532904 | 206.1.1.22 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr,EphA2_TM | 0.55 | 46.0 | 2.90e-01 | 96.6% | 25.2% |
| 3760233 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.55 | 46.0 | 2.73e-01 | 96.6% | 17.4% |
| 3909307 | 206.1.1.22 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr,EphA2_TM | 0.55 | 46.0 | 2.95e-01 | 96.6% | 27.3% |
| None | — | 0.55 | 46.0 | 2.77e-01 | 96.6% | 19.1% | |
| 4327587 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.55 | 38.0 | 2.73e-01 | 74.1% | 96.9% |
| 3680919 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.55 | 48.0 | 3.87e-01 | 100.0% | 91.3% |
| 3408936 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.55 | 42.0 | 3.76e-01 | 87.9% | 68.9% |
| 4655719 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.55 | 49.0 | 4.20e-01 | 100.0% | 68.9% |
| 4256610 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.54 | 44.0 | 3.48e-01 | 100.0% | 91.7% |
| 3970208 | 6043.1.1.7 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like › DUF2845 | 0.54 | 39.0 | 3.70e-01 | 87.9% | 64.0% |
| 3684732 | 11.1.3.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like | 0.53 | 45.0 | 3.50e-01 | 100.0% | 96.4% |
| 3725260 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.53 | 45.0 | 4.29e-01 | 98.3% | 78.6% |
| 3829886 | 220.1.1.19 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle | 0.53 | 38.0 | 3.50e-01 | 77.6% | 69.2% |
| 3284582 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.52 | 39.0 | 2.93e-01 | 81.0% | 64.7% |
| 3742121 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 34.0 | 3.65e-01 | 87.9% | 97.5% |
| 3526787 | 213.1.1.6 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ | 0.52 | 35.0 | 2.84e-01 | 84.5% | 32.3% |
| 3252821 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 42.0 | 3.46e-01 | 91.4% | 85.5% |
| 3461364 | 5.1.3.54 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1668 | 0.52 | 38.0 | 2.47e-01 | 86.2% | 99.1% |
| 4040055 | 4.26.1.1 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 | 0.52 | 41.0 | 4.12e-01 | 89.7% | 94.8% |
| 3370568 | 4111.1.1.0 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like | 0.51 | 32.0 | 2.76e-01 | 75.9% | 33.3% |
| 3875237 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.51 | 39.0 | 2.22e-01 | 89.7% | 13.3% |
| 4889666 | 11.2.1.117 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PI-PLC-Y | 0.51 | 42.0 | 3.36e-01 | 94.8% | 45.8% |
| 3513336 | 2002.1.1.220 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Menorin | 0.51 | 36.0 | 2.50e-01 | 79.3% | 32.3% |
| 3594267 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 41.0 | 3.45e-01 | 98.3% | 98.3% |
| 3286459 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.50 | 36.0 | 2.61e-01 | 79.3% | 55.9% |
| 3960946 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.50 | 38.0 | 2.93e-01 | 87.9% | 64.5% |