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LacPavin_0818_WC40_scaffold_120392_prodigal-single.1__X__X__00243
Bact-VirLacPavin_0818_WC40_scaffold_120392_prodigal-single.1__X__X__00243
Identity
- Kingdom:
- phage
Quality
93.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-140_173-204_241-254
Domain cluster:
rep: IMV_heparin_binding_surface_protein__YP_008004355__Choristoneura_biennis_entomopoxvirus__10288__D4-208
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8a57D01 | 3.40.50.11060 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTPase HflX, N-terminal domain | 0.59 | 33.0 | 4.27e-01 | 97.8% | 98.0% |
| 2lxrA00 | 3.30.110.40 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain | 0.55 | 24.0 | 3.75e-01 | 79.6% | 100.0% |
| 1a9xA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 32.0 | 3.99e-01 | 98.4% | 96.6% |
| 5gu6A02 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 28.0 | 3.61e-01 | 82.3% | 92.1% |
| 3guvA00 | 3.40.50.1390 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain | 0.52 | 35.0 | 3.84e-01 | 96.8% | 83.2% |
| 3h75A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 33.0 | 3.71e-01 | 97.8% | 83.5% |
| 2kl8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.51 | 22.0 | 3.05e-01 | 80.6% | 81.2% |
| 3qk7A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 36.0 | 4.15e-01 | 97.8% | 99.3% |
| 4fshA01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.50 | 32.0 | 3.73e-01 | 100.0% | 90.8% |
| 4pevA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 35.0 | 4.05e-01 | 96.8% | 100.0% |
| 1mwyA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 22.0 | 3.27e-01 | 81.7% | 100.0% |
D2
medium
residues 141-172_205-240_255-295
Domain cluster:
representative
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4011424 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.52 | 23.0 | 2.55e-01 | 100.0% | 50.0% |
| 2731504 | 859.1.1.1 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA | 0.52 | 38.0 | 3.71e-01 | 76.1% | 76.9% |