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LacPavin_0818_WC40_scaffold_120392_prodigal-single.1__X__X__00264
Bact-VirLacPavin_0818_WC40_scaffold_120392_prodigal-single.1__X__X__00264
Identity
- Kingdom:
- phage
Quality
72.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-27_40-68
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hi2B00 | 3.30.2310.40 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › | 0.59 | 47.0 | 4.05e-01 | 94.6% | 87.6% |
| 4tl8F00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 44.0 | 3.11e-01 | 89.3% | 96.7% |
| 2k75A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 43.0 | 3.60e-01 | 82.1% | 66.0% |
| 3frnA03 | 2.30.30.760 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 43.0 | 4.52e-01 | 98.2% | 92.2% |
| 2dr3A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 44.0 | 3.08e-01 | 91.1% | 95.7% |
| 1avwB00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.56 | 45.0 | 3.37e-01 | 100.0% | 48.0% |
| 1dusA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 40.0 | 2.78e-01 | 78.6% | 53.6% |
| 2xzmW01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.55 | 46.0 | 3.70e-01 | 100.0% | 72.0% |
| 1ggpA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.54 | 38.0 | 2.82e-01 | 75.0% | 45.6% |
| 2mc2A00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.53 | 42.0 | 3.05e-01 | 100.0% | 61.7% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.53 | 45.0 | 3.79e-01 | 98.2% | 57.1% |
| 4id2A00 | 2.40.128.510 | Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 | 0.52 | 42.0 | 3.35e-01 | 98.2% | 57.4% |
| 1u3eM01 | 3.90.75.20 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › | 0.52 | 41.0 | 3.46e-01 | 92.9% | 63.2% |
| 3cngA01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.52 | 32.0 | 3.53e-01 | 80.4% | 100.0% |
| 3wewA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 37.0 | 2.57e-01 | 80.4% | 89.7% |
| 2rgnB02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 37.0 | 2.99e-01 | 80.4% | 63.4% |
| 4wiaC00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 39.0 | 2.75e-01 | 89.3% | 96.9% |
| 2b7uA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.50 | 40.0 | 2.97e-01 | 91.1% | 64.4% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4992408 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.80 | 53.0 | 5.84e-01 | 76.8% | 86.7% |
| 3700010 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 61.0 | 3.87e-01 | 87.5% | 41.0% |
| 4029032 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.75 | 55.0 | 4.10e-01 | 92.9% | 32.6% |
| 3995153 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.74 | 52.0 | 4.23e-01 | 75.0% | 41.9% |
| 3877360 | 220.1.1.66 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH | 0.68 | 56.0 | 4.33e-01 | 91.1% | 49.6% |
| 3530034 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.67 | 53.0 | 4.12e-01 | 85.7% | 43.3% |
| 3479370 | 220.1.1.94 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CLEC16A_C | 0.67 | 50.0 | 3.60e-01 | 87.5% | 28.1% |
| 3883832 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.66 | 54.0 | 3.91e-01 | 91.1% | 37.5% |
| 3918879 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.66 | 56.0 | 4.15e-01 | 96.4% | 43.3% |
| 3612952 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.66 | 54.0 | 3.83e-01 | 91.1% | 50.0% |
| 3887822 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.65 | 52.0 | 4.05e-01 | 89.3% | 48.8% |
| 5071179 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 46.0 | 4.58e-01 | 78.6% | 73.3% |
| 3504193 | 220.1.1.49 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH | 0.63 | 51.0 | 4.09e-01 | 98.2% | 44.6% |
| 4930970 | 375.1.1.338 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7479 | 0.63 | 44.0 | 4.44e-01 | 75.0% | 80.0% |
| 1842572 | 6.1.1.6 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Lipoprotein_11 | 0.61 | 49.0 | 3.65e-01 | 91.1% | 95.5% |
| 3872511 | 220.1.1.192 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP_C | 0.61 | 52.0 | 3.99e-01 | 100.0% | 45.7% |
| 4952261 | 708.1.2.2 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › SelR | 0.60 | 47.0 | 3.90e-01 | 89.3% | 64.5% |
| 3214129 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 47.0 | 3.87e-01 | 96.4% | 48.8% |
| 3768329 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 42.0 | 3.37e-01 | 78.6% | 36.8% |
| 4980003 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.59 | 42.0 | 2.43e-01 | 76.8% | 45.6% |
| 3939093 | 4184.1.1.0 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat | 0.58 | 39.0 | 3.59e-01 | 92.9% | 53.3% |
| 4941828 | 2003.1.5.46 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS | 0.57 | 39.0 | 2.75e-01 | 73.2% | 51.3% |
| 5069060 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.57 | 47.0 | 4.24e-01 | 100.0% | 87.1% |
| 4945226 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 43.0 | 2.81e-01 | 89.3% | 76.5% |
| 3673032 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 45.0 | 4.27e-01 | 92.9% | 84.3% |
| 3990887 | 375.1.1.89 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LITAF-like | 0.56 | 46.0 | 4.72e-01 | 98.2% | 98.2% |
| 3248039 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 45.0 | 3.81e-01 | 92.9% | 83.0% |
| 4002382 | 7525.1.1.2 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 | 0.54 | 40.0 | 2.60e-01 | 82.1% | 27.8% |
| 4012486 | 5.1.4.321 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30361 | 0.54 | 44.0 | 2.66e-01 | 100.0% | 26.4% |
| 3935343 | 220.1.1.66 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH | 0.54 | 41.0 | 3.12e-01 | 91.1% | 40.6% |
| None | — | 0.54 | 46.0 | 3.10e-01 | 100.0% | 69.6% | |
| 4146428 | 5.1.3.154 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF30361 | 0.52 | 43.0 | 2.66e-01 | 100.0% | 37.1% |
| 224067 | 6098.1.1.1 ↗ | a+b two layers › BACOVA_05496-like › BACOVA_05496-like › BACOVA_05496-like › DUF4738 | 0.52 | 42.0 | 3.35e-01 | 98.2% | 57.4% |
| 4947514 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 42.0 | 2.83e-01 | 96.4% | 93.1% |
| 5051899 | 2003.1.5.46 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS | 0.50 | 40.0 | 2.77e-01 | 89.3% | 54.5% |