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LacPavin_0818_WC40_scaffold_120392_prodigal-single.1__X__X__00318

Bact-Vir

LacPavin_0818_WC40_scaffold_120392_prodigal-single.1__X__X__00318

Identity

Kingdom:
phage

Quality

68.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-77
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.66 40.0 3.91e-01 72.2% 55.0%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 34.0 4.09e-01 76.4% 77.8%
1dxkA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.65 46.0 3.26e-01 75.0% 31.7%
1o17D02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.61 50.0 3.51e-01 91.7% 77.5%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 48.0 3.13e-01 87.5% 42.7%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.60 52.0 4.91e-01 97.2% 96.6%
4rzkA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 41.0 3.91e-01 79.2% 60.9%
2xziA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 49.0 3.21e-01 100.0% 82.1%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 49.0 4.09e-01 97.2% 97.8%
2xgtB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 43.0 3.87e-01 79.2% 80.2%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 48.0 4.09e-01 97.2% 97.6%
1s2kA00 2.60.120.700 Mainly Beta › Sandwich › Jelly Rolls › Peptidase G1 0.58 50.0 3.70e-01 98.6% 75.4%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 49.0 3.36e-01 98.6% 92.5%
3m4pA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 44.0 3.79e-01 81.9% 81.2%
7c38B01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.57 47.0 3.23e-01 100.0% 72.8%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 46.0 4.44e-01 88.9% 88.0%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 47.0 3.96e-01 93.1% 79.8%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.57 41.0 3.05e-01 76.4% 87.8%
2ecfA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.57 49.0 3.08e-01 100.0% 89.1%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.56 40.0 3.15e-01 75.0% 82.4%
6n90A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.56 35.0 3.31e-01 72.2% 51.1%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.56 48.0 4.09e-01 100.0% 75.8%
3ow8C00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 3.27e-01 100.0% 90.3%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 45.0 3.02e-01 91.7% 33.7%
7uhyA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 3.06e-01 95.8% 74.8%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 48.0 3.97e-01 98.6% 74.2%
5yjlC02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.54 44.0 3.82e-01 88.9% 70.3%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 4.28e-01 93.1% 96.5%
1hkgA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 40.0 3.40e-01 81.9% 96.9%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.54 43.0 3.20e-01 100.0% 31.5%
1k8kC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 2.95e-01 95.8% 61.0%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 44.0 3.06e-01 91.7% 96.0%
1r5mA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 46.0 3.03e-01 100.0% 91.5%
5bncA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.53 42.0 3.89e-01 88.9% 81.7%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 39.0 3.21e-01 81.9% 66.2%
1vybA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.52 40.0 2.95e-01 88.9% 94.1%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 35.0 3.77e-01 91.7% 86.4%
2hesX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.97e-01 100.0% 91.6%
1s4uX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 40.0 2.70e-01 91.7% 32.9%
1kyfA01 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.51 39.0 3.29e-01 84.7% 84.3%
2ymsA00 2.40.128.630 Mainly Beta › Beta Barrel › Lipocalin › 0.51 41.0 3.51e-01 91.7% 71.8%
3aihB01 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.51 41.0 3.69e-01 93.1% 86.9%
4csqA00 2.30.29.190 Mainly Beta › Roll › PH-domain like › 0.51 43.0 3.80e-01 100.0% 83.2%
4fd0A01 2.60.40.3630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 3.65e-01 79.2% 89.9%
4aezA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.89e-01 98.6% 70.2%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.51 38.0 3.88e-01 98.6% 88.1%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 41.0 2.88e-01 90.3% 94.7%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 41.0 2.83e-01 90.3% 95.7%
1sp8C01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 41.0 3.28e-01 100.0% 76.0%
4bfeA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.67e-01 81.9% 96.3%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1512998 3953.1.1.1 a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3_N 0.69 41.0 3.90e-01 70.8% 50.6%
4203232 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.67 56.0 3.42e-01 91.7% 29.7%
5002276 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.65 42.0 4.17e-01 84.7% 62.7%
3209488 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.65 38.0 3.35e-01 79.2% 39.0%
3648118 3270.1.1.0 a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase 0.62 44.0 4.13e-01 75.0% 80.0%
3801806 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.61 54.0 4.65e-01 100.0% 96.5%
3474715 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 39.0 4.15e-01 100.0% 73.8%
1924009 227.1.1.10 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_PAP 0.60 44.0 3.58e-01 76.4% 94.0%
3510681 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 52.0 5.21e-01 95.8% 96.0%
3407569 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 47.0 3.13e-01 87.5% 45.2%
5057683 2484.1.1.38 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.60 48.0 4.05e-01 88.9% 81.6%
3633647 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.60 41.0 4.25e-01 86.1% 80.0%
3585489 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.59 50.0 3.27e-01 100.0% 82.1%
3396193 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.59 39.0 3.25e-01 83.3% 36.9%
4266074 394.1.1.1 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.59 44.0 4.71e-01 84.7% 95.0%
3177212 220.1.1.188 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BUD3_C 0.59 46.0 3.65e-01 86.1% 69.3%
3690077 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.58 41.0 2.86e-01 76.4% 31.7%
3786890 874.1.1.0 a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain 0.58 43.0 3.23e-01 81.9% 76.3%
3094882 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 45.0 3.07e-01 88.9% 74.3%
3623534 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 44.0 4.18e-01 86.1% 84.4%
3928695 220.1.1.49 beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH 0.57 46.0 3.68e-01 91.7% 56.8%
4011254 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 42.0 2.82e-01 81.9% 68.7%
3637445 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 43.0 3.17e-01 80.6% 49.4%
3709300 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 47.0 2.73e-01 94.4% 27.9%
3559756 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 48.0 3.17e-01 98.6% 77.3%
3244960 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 32.0 3.18e-01 76.4% 50.7%
3484503 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 45.0 3.18e-01 90.3% 90.2%
3484745 5.1.4.313 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_BBS7 0.56 42.0 2.82e-01 83.3% 44.1%
3721374 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.55 39.0 3.50e-01 79.2% 53.0%
4879215 3270.1.1.1 a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 0.55 45.0 4.18e-01 91.7% 81.1%
3517106 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 46.0 3.15e-01 100.0% 84.1%
3231101 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.55 44.0 3.04e-01 88.9% 41.1%
4079197 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 40.0 3.81e-01 95.8% 65.9%
3273300 3270.1.1.1 a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 0.55 45.0 4.20e-01 91.7% 90.0%
3706423 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 47.0 3.02e-01 98.6% 68.1%
3784138 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.54 46.0 3.11e-01 100.0% 92.7%
4001600 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.54 46.0 2.95e-01 100.0% 76.6%
3682049 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 42.0 2.90e-01 88.9% 59.3%
4015838 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 43.0 3.33e-01 86.1% 49.7%
3939610 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 46.0 3.12e-01 100.0% 89.0%
3485965 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 37.0 4.02e-01 91.7% 88.3%
3492352 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.54 43.0 3.82e-01 88.9% 61.9%
4101502 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.54 36.0 4.02e-01 91.7% 94.4%
4978399 210.1.2.4 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT 0.53 44.0 3.09e-01 95.8% 60.8%
4025365 220.1.1.74 beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.53 45.0 3.93e-01 93.1% 76.4%
3904275 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.53 42.0 2.64e-01 91.7% 38.7%
3869953 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 40.0 2.56e-01 83.3% 29.4%
4177200 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.52 36.0 3.97e-01 93.1% 94.5%
3795121 4.1.1.110 beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 0.52 34.0 3.56e-01 100.0% 73.8%
3510260 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 43.0 3.05e-01 100.0% 88.2%
3898586 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.52 44.0 2.80e-01 100.0% 63.1%
3221147 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 45.0 2.97e-01 100.0% 75.5%
3997304 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 43.0 2.83e-01 100.0% 68.6%
3507003 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 43.0 4.25e-01 100.0% 90.7%
3903857 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.52 44.0 2.78e-01 100.0% 53.6%
3822364 3270.1.1.1 a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 0.51 42.0 3.99e-01 91.7% 89.4%
3220929 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 38.0 3.81e-01 93.1% 76.0%
3993185 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 40.0 2.70e-01 90.3% 72.2%
3660922 4.1.1.249 beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.51 34.0 3.57e-01 93.1% 76.9%
3475799 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.50 41.0 3.59e-01 98.6% 61.6%
D2 medium residues 80-152
PDB