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LacPavin_0818_WC40_scaffold_120392_prodigal-single.1__X__X__00325
Bact-VirLacPavin_0818_WC40_scaffold_120392_prodigal-single.1__X__X__00325
Identity
- Kingdom:
- phage
Quality
88.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-71
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x9zA02 | 2.60.40.1140 | Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain | 0.64 | 47.0 | 3.86e-01 | 96.9% | 43.4% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.64 | 55.0 | 5.14e-01 | 100.0% | 97.6% |
| 6rptC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 46.0 | 3.93e-01 | 100.0% | 47.3% |
| 4h4nA00 | 2.60.40.3750 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 43.0 | 4.40e-01 | 100.0% | 80.6% |
| 2a74A02 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.59 | 44.0 | 3.83e-01 | 96.9% | 52.5% |
| 1bzoA00 | 2.60.40.200 | Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain | 0.58 | 48.0 | 3.66e-01 | 92.3% | 100.0% |
| 2xwxA03 | 2.60.40.2550 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 41.0 | 3.67e-01 | 100.0% | 53.1% |
| 3hwjA00 | 2.60.120.820 | Mainly Beta › Sandwich › Jelly Rolls › PHR domain | 0.56 | 44.0 | 3.48e-01 | 98.5% | 38.9% |
| 4ztkA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.56 | 41.0 | 2.82e-01 | 83.1% | 20.1% |
| 3ue3A02 | 3.30.450.330 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.55 | 41.0 | 3.28e-01 | 83.1% | 81.0% |
| 3fgtA01 | 2.10.70.60 | Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 | 0.55 | 31.0 | 3.32e-01 | 100.0% | 61.8% |
| 3x17A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 42.0 | 3.72e-01 | 96.9% | 55.9% |
| 3sd2A01 | 2.60.40.3080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 36.0 | 3.51e-01 | 100.0% | 58.4% |
| 2nytD00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.55 | 44.0 | 3.26e-01 | 98.5% | 33.0% |
| 3b7yA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.55 | 48.0 | 3.75e-01 | 100.0% | 86.8% |
| 6kghA02 | 3.30.450.330 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.54 | 40.0 | 3.15e-01 | 84.6% | 34.4% |
| 2qlcA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.54 | 40.0 | 3.40e-01 | 98.5% | 43.7% |
| 5cw3C01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.54 | 43.0 | 3.41e-01 | 100.0% | 40.8% |
| 4fk5A02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.54 | 44.0 | 2.98e-01 | 100.0% | 22.1% |
| 1w5dA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 39.0 | 2.72e-01 | 80.0% | 80.3% |
| 3q8pB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.53 | 44.0 | 3.89e-01 | 100.0% | 60.2% |
| 1i7dA03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.53 | 44.0 | 3.57e-01 | 100.0% | 94.3% |
| 3d33A00 | 2.60.40.3080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 36.0 | 3.32e-01 | 100.0% | 52.1% |
| 3no8A00 | 2.60.120.820 | Mainly Beta › Sandwich › Jelly Rolls › PHR domain | 0.52 | 40.0 | 3.17e-01 | 98.5% | 36.9% |
| 3eqvA02 | 3.30.450.330 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 38.0 | 3.19e-01 | 84.6% | 41.4% |
| 2wq4A01 | 2.60.120.760 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 44.0 | 3.60e-01 | 100.0% | 68.2% |
| 2je8A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 41.0 | 3.50e-01 | 90.8% | 81.8% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2123014 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.74 | 49.0 | 3.50e-01 | 100.0% | 25.6% |
| 4065108 | 284.3.1.1 ↗ | a+b two layers › FKBP-like › Colicin E3 immunity protein › Colicin E3 immunity protein › Cloacin_immun | 0.66 | 57.0 | 5.28e-01 | 100.0% | 95.3% |
| 3898732 | 11.1.1.560 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKAT_KLD | 0.63 | 47.0 | 4.33e-01 | 98.5% | 60.0% |
| 4981612 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.63 | 43.0 | 3.97e-01 | 96.9% | 55.3% |
| 4590767 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.62 | 54.0 | 3.31e-01 | 100.0% | 31.7% |
| 3928219 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 44.0 | 4.06e-01 | 96.9% | 56.7% |
| 4957360 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 49.0 | 4.08e-01 | 100.0% | 50.4% |
| 5060440 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 47.0 | 4.02e-01 | 100.0% | 50.9% |
| 3469342 | 11.1.4.8 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Pollen_Ole_e_1 | 0.59 | 44.0 | 3.82e-01 | 100.0% | 50.5% |
| 5036165 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 40.0 | 3.98e-01 | 98.5% | 67.1% |
| 5023643 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 45.0 | 3.74e-01 | 98.5% | 47.0% |
| 5012526 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.57 | 38.0 | 3.52e-01 | 98.5% | 52.9% |
| 3190606 | 11.1.1.236 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mannosidase_ig | 0.57 | 43.0 | 3.69e-01 | 100.0% | 47.8% |
| 3621262 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.57 | 40.0 | 4.09e-01 | 100.0% | 81.7% |
| 5009315 | 11.1.1.1440 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29295 | 0.57 | 47.0 | 2.98e-01 | 100.0% | 17.8% |
| 4963367 | 11.1.1.1424 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 | 0.56 | 44.0 | 3.69e-01 | 98.5% | 47.5% |
| 5039260 | 11.1.1.1424 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 | 0.56 | 44.0 | 3.68e-01 | 98.5% | 48.7% |
| 4968615 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.56 | 45.0 | 3.70e-01 | 96.9% | 45.2% |
| 1489706 | 11.1.1.48 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CelD_N | 0.56 | 44.0 | 3.87e-01 | 95.4% | 56.4% |
| 3963488 | 821.1.1.7 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG | 0.56 | 50.0 | 4.13e-01 | 100.0% | 61.7% |
| 4963366 | 11.1.1.1424 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 | 0.55 | 44.0 | 3.74e-01 | 100.0% | 51.8% |
| 4013678 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.55 | 45.0 | 3.78e-01 | 95.4% | 51.2% |
| 3261455 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.55 | 43.0 | 3.50e-01 | 98.5% | 43.7% |
| 4938899 | 11.1.1.1424 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 | 0.54 | 47.0 | 3.77e-01 | 98.5% | 60.0% |
| 3218185 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 45.0 | 3.29e-01 | 100.0% | 31.2% |
| 4175824 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.54 | 43.0 | 4.39e-01 | 98.5% | 89.2% |
| 3272930 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 41.0 | 3.50e-01 | 96.9% | 48.7% |
| 3490077 | 11.1.1.652 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ribophorin_II_3rd | 0.54 | 42.0 | 3.31e-01 | 100.0% | 39.3% |
| 3716719 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 45.0 | 3.13e-01 | 100.0% | 28.2% |
| 4030210 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 41.0 | 3.18e-01 | 96.9% | 36.1% |
| 3909337 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.53 | 45.0 | 3.78e-01 | 100.0% | 58.3% |
| 5027920 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 42.0 | 3.40e-01 | 90.8% | 67.4% |
| 5062230 | 10.1.2.183 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC | 0.51 | 34.0 | 3.06e-01 | 100.0% | 43.8% |
| 3270534 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.51 | 45.0 | 3.58e-01 | 100.0% | 48.1% |
| 4024492 | 11.1.1.45 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 | 0.51 | 40.0 | 3.48e-01 | 98.5% | 52.7% |
| 4950100 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 40.0 | 3.59e-01 | 100.0% | 60.0% |
| 3803901 | 11.1.4.8 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Pollen_Ole_e_1 | 0.51 | 45.0 | 3.52e-01 | 100.0% | 76.4% |
| 4970081 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 40.0 | 3.50e-01 | 100.0% | 53.0% |
| 3271430 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.51 | 43.0 | 3.53e-01 | 98.5% | 49.2% |
| 5036988 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 38.0 | 3.34e-01 | 100.0% | 52.4% |
| 3932826 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.50 | 40.0 | 3.20e-01 | 90.8% | 92.9% |
| 4996421 | 11.1.1.184 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Wzt_C | 0.50 | 40.0 | 3.26e-01 | 98.5% | 43.6% |