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LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00012

Bact-Vir

LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00012

Identity

Kingdom:
phage

Quality

78.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-122
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.76 71.0 6.04e-01 100.0% 91.4%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.75 69.0 6.08e-01 100.0% 92.6%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.75 68.0 5.91e-01 100.0% 86.3%
3he1A00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.73 67.0 5.97e-01 100.0% 89.8%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 57.0 5.08e-01 100.0% 64.6%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.67 39.0 4.10e-01 91.4% 62.2%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.65 55.0 5.26e-01 98.1% 78.2%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.64 32.0 3.37e-01 100.0% 52.0%
2f8xC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 41.0 4.35e-01 90.5% 74.5%
4f0qD01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.61 52.0 4.02e-01 97.1% 60.8%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.61 45.0 4.54e-01 89.5% 76.4%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.60 47.0 4.47e-01 94.3% 70.4%
3bguA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 39.0 4.03e-01 74.3% 70.8%
1o51A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 37.0 4.02e-01 81.9% 73.0%
5lhrA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 49.0 4.81e-01 98.1% 82.1%
6ruiB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.59 44.0 4.16e-01 77.1% 93.7%
1ntpA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 45.0 4.63e-01 99.0% 83.5%
3dfjA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 46.0 4.58e-01 99.0% 80.5%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 37.0 3.94e-01 77.1% 73.3%
2aiqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 45.0 4.39e-01 100.0% 76.1%
6r2wH02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 47.0 4.64e-01 100.0% 83.6%
1vi7A01 3.30.230.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Impact, N-terminal domain 0.58 45.0 4.14e-01 81.9% 72.6%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.57 52.0 4.12e-01 100.0% 90.5%
5fcrC02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 45.0 4.56e-01 100.0% 85.0%
1a5iA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 48.0 4.71e-01 100.0% 85.6%
4f3lA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 41.0 3.92e-01 75.2% 89.3%
4liqE05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 4.28e-01 88.6% 82.0%
4noiA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.56 42.0 4.25e-01 87.6% 81.6%
1uw4A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 39.0 4.10e-01 82.9% 83.5%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.55 33.0 3.34e-01 94.3% 57.8%
3tk9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 43.0 4.31e-01 99.0% 83.2%
3o4oB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 4.28e-01 90.5% 80.7%
4ympA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 48.0 4.74e-01 99.0% 90.2%
3eeeA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.54 45.0 3.76e-01 92.4% 59.0%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.52 43.0 4.33e-01 95.2% 87.7%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 39.0 4.08e-01 82.9% 84.8%
6y1zA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.52 45.0 3.56e-01 93.3% 82.1%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 38.0 3.93e-01 83.8% 81.4%
4gafB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 4.31e-01 90.5% 92.7%
2bg9C01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.51 43.0 3.48e-01 92.4% 87.1%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 4.28e-01 90.5% 97.1%
1em2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 45.0 3.63e-01 99.0% 74.3%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 38.0 3.86e-01 83.8% 79.2%
2bj0A00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.51 43.0 3.54e-01 95.2% 78.3%
4jb9H01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.88e-01 89.5% 75.6%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995819 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.83 78.0 6.81e-01 100.0% 98.7%
3581358 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.82 76.0 6.61e-01 99.0% 89.7%
4995820 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.80 74.0 6.83e-01 99.0% 99.2%
2595159 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.79 74.0 6.24e-01 100.0% 80.7%
5003885 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.79 74.0 6.55e-01 100.0% 90.3%
2832217 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.79 73.0 6.53e-01 100.0% 93.7%
4888726 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.78 73.0 6.19e-01 100.0% 82.9%
4009489 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.77 71.0 6.17e-01 100.0% 87.7%
2471637 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.77 71.0 6.26e-01 100.0% 91.9%
4873215 1.1.13.11 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 0.75 70.0 6.28e-01 100.0% 90.0%
3587074 1.1.13.17 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N 0.75 67.0 6.67e-01 97.1% 99.1%
4929634 1.1.5.47 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.74 68.0 4.89e-01 98.1% 43.3%
5078836 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 67.0 6.58e-01 100.0% 100.0%
5040331 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.71 66.0 5.84e-01 100.0% 95.2%
3943282 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.67 57.0 5.49e-01 99.0% 80.8%
2407461 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.67 57.0 5.31e-01 98.1% 74.0%
3602499 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.67 61.0 5.65e-01 100.0% 90.0%
4118093 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.66 60.0 5.25e-01 100.0% 79.4%
4968263 1.1.5.91 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_C 0.66 60.0 4.68e-01 100.0% 63.2%
5027270 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.66 60.0 5.04e-01 100.0% 76.6%
3591908 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 55.0 4.67e-01 93.3% 81.1%
4988254 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.65 59.0 4.93e-01 100.0% 70.6%
4287081 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.65 56.0 5.29e-01 98.1% 78.4%
4992907 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.65 58.0 5.13e-01 100.0% 80.6%
3991601 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.65 50.0 4.43e-01 95.2% 55.3%
3967199 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 50.0 5.00e-01 92.4% 81.9%
5053266 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.63 57.0 4.95e-01 100.0% 88.7%
4640974 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.62 53.0 5.09e-01 98.1% 80.8%
4980234 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 56.0 4.66e-01 100.0% 67.8%
3784272 1.1.7.102 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28793 0.62 52.0 5.03e-01 93.3% 86.7%
4968810 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.61 40.0 4.34e-01 84.8% 78.9%
4888780 304.124.1.5 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › T4-gp15_tss 0.61 53.0 4.10e-01 96.2% 79.1%
3688095 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 45.0 4.34e-01 87.6% 70.0%
3589403 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.60 50.0 4.85e-01 91.4% 91.7%
4034134 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.59 50.0 4.74e-01 92.4% 93.6%
3926912 10.10.1.0 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.59 51.0 4.49e-01 97.1% 93.8%
3635086 868.1.1.8 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › SLS1_C 0.59 44.0 3.14e-01 79.0% 52.1%
3703566 306.10.1.0 a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 0.58 39.0 3.77e-01 88.6% 60.0%
3428859 2002.1.1.219 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Raffinose_syn 0.57 45.0 4.84e-01 90.5% 97.7%
3192615 868.1.1.8 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › SLS1_C 0.57 44.0 3.15e-01 81.9% 48.7%
3607007 306.5.1.0 a+b two layers › Glucose permease domain IIB-like › GTP cyclohydrolase I feedback regulatory protein, GFRP › GTP cyclohydrolase I feedback regulatory protein, GFRP 0.57 38.0 3.70e-01 88.6% 60.0%
4202541 1.1.9.23 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.57 47.0 4.66e-01 97.1% 84.3%
5040496 304.54.1.0 a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.57 36.0 3.96e-01 85.7% 82.5%
4954550 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.57 49.0 4.81e-01 96.2% 87.0%
2449257 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.56 48.0 3.54e-01 95.2% 41.3%
1725 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.55 42.0 4.26e-01 89.5% 79.4%
4988150 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.55 38.0 3.90e-01 99.0% 72.4%
4246300 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.55 48.0 3.81e-01 95.2% 73.8%
4454427 220.1.1.9 beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.55 47.0 3.86e-01 99.0% 51.9%
2892215 5091.1.1.1 beta sandwiches › VP4 membrane interaction domain › VP4 membrane interaction domain › VP4 membrane interaction domain › Rota_VP4_MID 0.55 46.0 3.61e-01 93.3% 71.1%
3482762 11.12.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like 0.55 47.0 3.70e-01 94.3% 73.2%
3925983 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 4.29e-01 88.6% 90.0%
4670273 868.1.1.8 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › SLS1_C 0.54 40.0 3.10e-01 79.0% 55.2%
5035109 304.102.1.2 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD 0.54 48.0 3.85e-01 99.0% 93.8%
3781326 868.1.1.8 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › SLS1_C 0.54 40.0 2.91e-01 78.1% 52.8%
3285854 4182.1.1.0 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.53 43.0 4.00e-01 85.7% 97.7%
3476718 11.1.1.108 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.53 43.0 3.93e-01 87.6% 93.6%
3665392 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 47.0 4.57e-01 100.0% 89.2%
3879161 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 46.0 3.01e-01 96.2% 48.6%
3942921 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 46.0 3.70e-01 100.0% 89.3%
3624618 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.52 43.0 3.46e-01 92.4% 72.9%
3947208 884.1.1.1 a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.51 41.0 4.14e-01 86.7% 84.8%
3550995 58.1.1.1 beta barrels › Oncogene product-like › Oncogene products › Oncogene products › TCL1_MTCP1 0.51 42.0 4.28e-01 93.3% 91.0%
3701881 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.51 40.0 3.32e-01 84.8% 65.8%
3973926 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.51 43.0 3.94e-01 92.4% 88.6%
3836641 11.10.1.5 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.51 39.0 3.56e-01 83.8% 85.5%
3322470 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.50 40.0 3.27e-01 89.5% 45.6%