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LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00020
Bact-VirLacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00020
Identity
- Kingdom:
- phage
Quality
92.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-105
Domain cluster:
rep: SCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00025__D8-100
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1y96A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 41.0 | 4.42e-01 | 100.0% | 60.5% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 35.0 | 4.26e-01 | 100.0% | 86.2% |
| 4ecnA02 | 2.60.40.3540 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 | 0.54 | 29.0 | 2.72e-01 | 100.0% | 41.8% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 33.0 | 3.25e-01 | 99.0% | 56.5% |
| 2irmA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.53 | 42.0 | 3.02e-01 | 87.4% | 88.2% |
| 3zgzD04 | 2.20.28.290 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.52 | 27.0 | 3.23e-01 | 100.0% | 77.4% |
| 5b08A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 35.0 | 3.58e-01 | 70.9% | 100.0% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.50 | 29.0 | 3.48e-01 | 100.0% | 100.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3612351 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 37.0 | 4.22e-01 | 99.0% | 89.3% |
| 4335061 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.57 | 28.0 | 3.66e-01 | 99.0% | 94.0% |
| 3570827 | 389.1.1.181 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › MACPF | 0.56 | 43.0 | 3.49e-01 | 84.5% | 87.6% |
| 5062185 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.55 | 38.0 | 4.04e-01 | 70.9% | 97.8% |
| 2531595 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.54 | 28.0 | 3.50e-01 | 100.0% | 94.1% |
| 3791663 | 304.4.1.52 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF7153 | 0.51 | 43.0 | 3.40e-01 | 95.1% | 97.8% |