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LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00068

Bact-Vir

LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00068

Identity

Kingdom:
phage

Quality

87.7 mean pLDDT

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-100
PDB
Domain cluster: rep: BML_08042016_6_5m_scaffold_2_prodigal-single.1__X__X__00280__D1-120
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ztbA03 2.60.40.3040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.69 35.0 4.69e-01 79.4% 97.9%
2vqaA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 45.0 3.69e-01 76.3% 74.6%
6l9iA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 44.0 3.61e-01 75.3% 71.7%
1gqgC02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 46.0 3.68e-01 80.4% 73.5%
5cadA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 41.0 3.27e-01 75.3% 66.3%
6l4cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 39.0 3.27e-01 72.2% 72.8%
2wyhA05 2.60.40.2210 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 41.0 3.70e-01 78.4% 98.5%
3d0jA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 36.0 3.26e-01 72.2% 71.7%
1nz8A00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.51 37.0 3.51e-01 76.3% 95.0%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032830 3772.1.1.1 ↗ beta sandwiches › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › FecR 0.66 37.0 2.97e-01 82.5% 29.7%
3371935 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.64 48.0 3.82e-01 79.4% 72.6%
4215468 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.63 53.0 3.41e-01 91.8% 66.7%
3833580 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.63 50.0 3.83e-01 85.6% 69.5%
3969117 10.12.1.104 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding, Cupin_2 0.63 51.0 4.22e-01 88.7% 68.6%
2129545 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.62 47.0 3.51e-01 80.4% 57.3%
3747717 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.62 45.0 3.30e-01 77.3% 52.3%
None — 0.61 46.0 3.51e-01 80.4% 58.5%
3428742 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.60 54.0 3.69e-01 99.0% 78.8%
4439358 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.59 53.0 3.54e-01 99.0% 66.8%
3691764 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.59 53.0 3.47e-01 99.0% 63.1%
4536849 10.12.1.146 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › HTH_3 0.59 50.0 3.32e-01 93.8% 61.7%
4946546 304.139.1.3 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_Cas7 0.56 44.0 3.31e-01 89.7% 84.5%
3732029 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.55 39.0 2.65e-01 75.3% 34.7%
3798341 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.54 39.0 3.06e-01 77.3% 42.3%
3788339 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.51 36.0 3.21e-01 75.3% 60.8%