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LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00134
Bact-VirLacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00134
Identity
- Kingdom:
- phage
Quality
58.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-87
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_75050_prodigal-single.1__X__X__00033__D102-168
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2b6cA01 | 1.20.1660.10 | Mainly Alpha › Up-down Bundle › ARM repeat fold › Hypothetical protein (EF3068) | 0.70 | 56.0 | 4.78e-01 | 97.1% | 52.6% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.67 | 50.0 | 4.18e-01 | 79.4% | 82.9% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.67 | 49.0 | 4.78e-01 | 79.4% | 81.8% |
| 3l09A01 | 1.20.58.1460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 52.0 | 4.62e-01 | 85.3% | 72.4% |
| 4g26A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.66 | 57.0 | 3.76e-01 | 98.5% | 23.7% |
| 1nlxA00 | 1.20.120.320 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Group V grass pollen allergen | 0.66 | 52.0 | 4.57e-01 | 86.8% | 66.3% |
| 1y4cA03 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.65 | 48.0 | 4.11e-01 | 80.9% | 63.7% |
| 3rk6A00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.64 | 52.0 | 3.76e-01 | 94.1% | 33.6% |
| 5gmkZ01 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.64 | 55.0 | 3.86e-01 | 100.0% | 34.1% |
| 2ggfA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.63 | 54.0 | 4.41e-01 | 100.0% | 59.1% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.63 | 45.0 | 3.88e-01 | 76.5% | 82.9% |
| 1wrdA00 | 1.20.58.160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 49.0 | 4.35e-01 | 83.8% | 81.6% |
| 2podA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.63 | 53.0 | 3.69e-01 | 100.0% | 39.5% |
| 2qyuA02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.62 | 54.0 | 3.97e-01 | 100.0% | 40.5% |
| 1cb8A01 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.62 | 52.0 | 3.49e-01 | 100.0% | 28.5% |
| 1bf5A01 | 1.20.1050.20 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain | 0.61 | 52.0 | 4.02e-01 | 100.0% | 79.8% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 46.0 | 4.25e-01 | 83.8% | 94.6% |
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.61 | 46.0 | 4.10e-01 | 83.8% | 86.0% |
| 3qc1A01 | 1.25.40.540 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAP42-like family | 0.60 | 48.0 | 3.80e-01 | 89.7% | 66.2% |
| 5yhhA00 | 2.40.33.20 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.60 | 45.0 | 3.35e-01 | 83.8% | 59.0% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.60 | 44.0 | 4.32e-01 | 79.4% | 89.2% |
| 2imiB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 50.0 | 4.11e-01 | 100.0% | 72.1% |
| 2rg8A00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.59 | 50.0 | 4.00e-01 | 100.0% | 50.7% |
| 2lqgA00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.59 | 46.0 | 3.77e-01 | 88.2% | 76.1% |
| 3uumA00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 46.0 | 3.90e-01 | 88.2% | 79.5% |
| 1i5nB00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.58 | 44.0 | 3.67e-01 | 82.4% | 49.2% |
| 4me9B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 49.0 | 3.69e-01 | 100.0% | 58.1% |
| 2lciA00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 50.0 | 3.96e-01 | 98.5% | 73.9% |
| 1sxjE03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.56 | 48.0 | 4.36e-01 | 98.5% | 88.7% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.56 | 44.0 | 4.32e-01 | 88.2% | 88.0% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.55 | 41.0 | 4.25e-01 | 82.4% | 88.7% |
| 1qwkA00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.54 | 47.0 | 3.09e-01 | 98.5% | 33.0% |
| 2y1vA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 46.0 | 3.41e-01 | 97.1% | 67.6% |
| 6dv2G02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 46.0 | 3.45e-01 | 100.0% | 69.6% |
| 1ydhA00 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 45.0 | 3.42e-01 | 100.0% | 87.0% |
| 1x3zA03 | 1.10.1740.90 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.53 | 39.0 | 3.66e-01 | 80.9% | 90.9% |
| 4yo7A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 40.0 | 3.21e-01 | 100.0% | 38.5% |
| 4w8pA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.51 | 39.0 | 3.29e-01 | 85.3% | 83.8% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 44.0 | 3.95e-01 | 97.1% | 78.1% |
| 2be4A03 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.50 | 43.0 | 3.97e-01 | 97.1% | 85.2% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3820599 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.72 | 65.0 | 4.73e-01 | 100.0% | 47.2% |
| 4022167 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 60.0 | 3.25e-01 | 94.1% | 7.3% |
| 3391380 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.68 | 53.0 | 4.65e-01 | 85.3% | 81.9% |
| 3594203 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.67 | 52.0 | 4.52e-01 | 85.3% | 94.3% |
| 3741034 | 109.4.1.1858 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_GCN1_fung | 0.66 | 58.0 | 4.15e-01 | 98.5% | 34.1% |
| 3925019 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 55.0 | 4.05e-01 | 97.1% | 45.6% |
| 3523840 | 603.1.1.6 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 | 0.65 | 55.0 | 4.02e-01 | 97.1% | 79.5% |
| 3187296 | 603.1.1.98 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE, Syntaxin_2 | 0.64 | 54.0 | 3.85e-01 | 95.6% | 73.0% |
| 3504305 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.64 | 48.0 | 4.18e-01 | 80.9% | 80.0% |
| 3916583 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 55.0 | 3.30e-01 | 100.0% | 18.9% |
| 4017645 | 603.1.1.6 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 | 0.64 | 53.0 | 4.03e-01 | 98.5% | 85.9% |
| 3683778 | 611.3.1.0 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.63 | 51.0 | 4.50e-01 | 92.6% | 70.5% |
| 4610045 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.63 | 53.0 | 3.94e-01 | 98.5% | 36.9% |
| 4029016 | 109.4.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › 14-3-3 | 0.62 | 53.0 | 3.64e-01 | 98.5% | 31.2% |
| 3684480 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 52.0 | 4.45e-01 | 97.1% | 67.0% |
| 3388439 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.62 | 49.0 | 3.37e-01 | 89.7% | 61.2% |
| 4953492 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.62 | 48.0 | 3.80e-01 | 88.2% | 56.1% |
| 4187493 | 603.1.1.103 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF29732 | 0.61 | 52.0 | 4.20e-01 | 100.0% | 87.6% |
| 3860700 | 109.25.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A › GAIN | 0.61 | 52.0 | 4.42e-01 | 98.5% | 75.8% |
| 4979111 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.61 | 51.0 | 4.52e-01 | 94.1% | 91.0% |
| 4883406 | 622.4.1.1 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › Blo-t-5 | 0.61 | 48.0 | 4.10e-01 | 88.2% | 77.6% |
| 3635003 | 611.3.1.0 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.60 | 51.0 | 4.51e-01 | 98.5% | 76.2% |
| 3503329 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.60 | 45.0 | 4.15e-01 | 83.8% | 90.5% |
| 3881443 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.60 | 44.0 | 2.97e-01 | 80.9% | 84.5% |
| 3994935 | 109.4.1.469 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS15 | 0.60 | 50.0 | 3.31e-01 | 100.0% | 35.0% |
| 3899960 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.60 | 47.0 | 4.22e-01 | 88.2% | 87.0% |
| 3524429 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.59 | 47.0 | 4.21e-01 | 89.7% | 86.0% |
| 4026893 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.59 | 47.0 | 3.50e-01 | 92.6% | 49.8% |
| 4979634 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.59 | 46.0 | 3.85e-01 | 83.8% | 73.9% |
| 5000698 | 604.38.1.0 ↗ | alpha bundles › Spectrin repeat-like › Legionella effector SdeA 3-helical bundle › Legionella effector SdeA 3-helical bundle | 0.59 | 45.0 | 3.95e-01 | 83.8% | 67.6% |
| 4034377 | 4982.1.1.2 ↗ | alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain › RsbU_N | 0.59 | 49.0 | 4.56e-01 | 97.1% | 85.6% |
| 3594222 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 49.0 | 3.46e-01 | 100.0% | 33.3% |
| 4244937 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.58 | 43.0 | 2.82e-01 | 80.9% | 19.0% |
| 4939273 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.57 | 43.0 | 4.30e-01 | 80.9% | 94.3% |
| 3724761 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.56 | 44.0 | 4.41e-01 | 88.2% | 91.4% |
| 3839655 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.56 | 41.0 | 2.82e-01 | 77.9% | 69.2% |
| 3992612 | 604.6.1.1 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT | 0.56 | 43.0 | 4.02e-01 | 88.2% | 93.3% |
| 3293442 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.56 | 47.0 | 3.31e-01 | 92.6% | 77.3% |
| 3931307 | 601.1.2.4 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_R4 | 0.54 | 42.0 | 3.42e-01 | 88.2% | 80.7% |
D2
high
residues 106-173