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LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00142
Bact-VirLacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00142
Identity
- Kingdom:
- phage
Quality
72.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 96-171
Domain cluster:
rep: FFSP_09252017_12_scaffold_64_prodigal-single.1__X__X__00333__D185-261
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21977.3 best | DUF6926 | 30.6 | 5.50e-07 | 81.6% | 47.9% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ialA03 | 3.30.110.30 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › C-terminal domain of ProRS | 0.69 | 47.0 | 4.75e-01 | 100.0% | 70.5% |
| 2ei9A00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.51 | 45.0 | 3.29e-01 | 98.7% | 43.5% |
| 3oo3A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.51 | 44.0 | 2.88e-01 | 100.0% | 69.3% |
| 2hfzA01 | 3.30.70.2840 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Flavivirus RNA-directed RNA polymerase, thumb domain | 0.51 | 36.0 | 3.48e-01 | 76.3% | 93.3% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4057988 | 328.2.1.1 ↗ | a+b two layers › IF3-like › C-terminal domain of ProRS › C-terminal domain of ProRS › ProRS-C_1 | 0.72 | 46.0 | 4.52e-01 | 100.0% | 61.3% |
| 1190971 | 328.2.1.1 ↗ | a+b two layers › IF3-like › C-terminal domain of ProRS › C-terminal domain of ProRS › ProRS-C_1 | 0.69 | 48.0 | 4.57e-01 | 100.0% | 61.1% |
| 4979852 | 328.2.1.0 ↗ | a+b two layers › IF3-like › C-terminal domain of ProRS › C-terminal domain of ProRS | 0.69 | 47.0 | 4.71e-01 | 100.0% | 69.6% |
| 4338497 | 328.2.1.1 ↗ | a+b two layers › IF3-like › C-terminal domain of ProRS › C-terminal domain of ProRS › ProRS-C_1 | 0.67 | 44.0 | 4.38e-01 | 100.0% | 63.7% |
| 4946598 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 42.0 | 2.80e-01 | 88.2% | 32.7% |
| 4051573 | 304.5.1.18 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › PrmA | 0.51 | 34.0 | 3.19e-01 | 100.0% | 54.0% |
D2
high
residues 186-265
Domain cluster:
rep: IMGVR_UViG_3300016263_000379-3300016263-Ga0185526_1138468__D14-94
D3
medium
residues 33-91