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LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00192
Bact-VirLacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00192
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-129
Domain cluster:
rep: BML_coassembly_scaffold_50_prodigal-single.1__X__X__00038__D347-509
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08302.17 best | tRNA_lig_CPD | 25.7 | 1.00e-05 | 89.3% | 33.6% |
D2
high
residues 546-559_596-708
Domain cluster:
rep: RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00228__D6-19_56-167
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10307.16 best | HAD_SAK_1 | 49.3 | 7.40e-13 | 84.2% | 49.3% |
D3
medium
residues 162-296
Domain cluster:
rep: CG10_big_fil_rev_8_21_14_0-10_scaffold_17_prodigal-single.1__X__X__00080__D4-138
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01743.27 best | PolyA_pol | 88.6 | 6.00e-25 | 95.6% | 99.2% |
D4
medium
residues 297-409
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12627.13 best | PolyA_pol_RNAbd | 61.9 | 5.30e-17 | 52.2% | 89.1% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mivA02 | 1.10.110.30 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › | 0.92 | 71.0 | 7.77e-01 | 79.6% | 99.0% |
| 4x4wA02 | 1.10.3090.10 | Mainly Alpha › Orthogonal Bundle › cca-adding enzyme, domain 2 › cca-adding enzyme, domain 2 | 0.86 | 81.0 | 6.56e-01 | 100.0% | 60.7% |
| 4wbyA02 | 1.10.3090.10 | Mainly Alpha › Orthogonal Bundle › cca-adding enzyme, domain 2 › cca-adding enzyme, domain 2 | 0.85 | 79.0 | 6.10e-01 | 100.0% | 56.8% |
| 3h38A02 | 1.10.3090.10 | Mainly Alpha › Orthogonal Bundle › cca-adding enzyme, domain 2 › cca-adding enzyme, domain 2 | 0.84 | 79.0 | 5.85e-01 | 100.0% | 55.1% |
| 3aqlA02 | 1.10.3090.10 | Mainly Alpha › Orthogonal Bundle › cca-adding enzyme, domain 2 › cca-adding enzyme, domain 2 | 0.83 | 77.0 | 5.88e-01 | 100.0% | 64.1% |
| 4wqoD00 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.64 | 50.0 | 4.65e-01 | 83.2% | 88.7% |
| 2wzkA01 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.63 | 50.0 | 4.81e-01 | 83.2% | 99.2% |
| 3wozB00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.57 | 50.0 | 4.02e-01 | 99.1% | 62.9% |
| 5haxA01 | 1.20.58.1780 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 44.0 | 3.53e-01 | 86.7% | 81.1% |
| 4r0zA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.55 | 47.0 | 3.10e-01 | 99.1% | 33.4% |
| 1juqC00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 47.0 | 4.34e-01 | 98.2% | 87.9% |
| 2d96A01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.51 | 28.0 | 3.08e-01 | 96.5% | 63.7% |
| 2ygwA01 | 1.20.140.90 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain | 0.51 | 41.0 | 3.82e-01 | 91.2% | 96.1% |
| 2lsgA00 | 1.20.58.1280 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DNA repair protein Rev1, C-terminal domain | 0.51 | 38.0 | 4.02e-01 | 78.8% | 100.0% |
| 3fy4C03 | 1.10.579.10 | Mainly Alpha › Orthogonal Bundle › DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3 › DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 | 0.50 | 35.0 | 2.90e-01 | 72.6% | 39.6% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4944307 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.90 | 86.0 | 6.21e-01 | 100.0% | 50.4% |
| 3741993 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.90 | 85.0 | 5.93e-01 | 100.0% | 49.7% |
| 3950512 | 131.2.1.1 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD,PolyA_pol_RNAbd | 0.89 | 85.0 | 5.96e-01 | 100.0% | 51.1% |
| 4480867 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.89 | 85.0 | 6.12e-01 | 100.0% | 51.8% |
| 4037315 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.89 | 84.0 | 6.24e-01 | 100.0% | 48.6% |
| 4511032 | 131.2.1.1 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD,PolyA_pol_RNAbd | 0.88 | 83.0 | 5.93e-01 | 100.0% | 54.7% |
| 4275218 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.88 | 83.0 | 6.25e-01 | 100.0% | 49.2% |
| 4524098 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.88 | 84.0 | 6.10e-01 | 100.0% | 58.9% |
| 4800 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.88 | 84.0 | 6.13e-01 | 100.0% | 46.0% |
| 4044665 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.88 | 83.0 | 6.17e-01 | 100.0% | 48.6% |
| 4558118 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.87 | 83.0 | 6.00e-01 | 100.0% | 55.4% |
| 2801534 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.87 | 82.0 | 6.23e-01 | 100.0% | 48.5% |
| 4156349 | 131.2.1.1 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD,PolyA_pol_RNAbd | 0.86 | 81.0 | 5.64e-01 | 100.0% | 54.8% |
| 4090696 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.86 | 81.0 | 5.91e-01 | 100.0% | 49.6% |
| 4146848 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.86 | 81.0 | 6.10e-01 | 100.0% | 48.8% |
| 3502691 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.85 | 81.0 | 5.99e-01 | 100.0% | 46.9% |
| 4096783 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.85 | 79.0 | 5.97e-01 | 100.0% | 49.8% |
| 4411977 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.85 | 80.0 | 6.00e-01 | 100.0% | 48.2% |
| 4583076 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.85 | 80.0 | 6.06e-01 | 100.0% | 49.4% |
| 3487115 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.85 | 80.0 | 5.92e-01 | 100.0% | 47.5% |
| 4033097 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.85 | 80.0 | 5.95e-01 | 100.0% | 45.0% |
| 3935620 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.85 | 79.0 | 5.88e-01 | 100.0% | 46.8% |
| 3447473 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.84 | 79.0 | 5.67e-01 | 100.0% | 68.7% |
| 3352880 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.84 | 79.0 | 6.00e-01 | 100.0% | 79.6% |
| 4196298 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.84 | 80.0 | 5.95e-01 | 100.0% | 47.1% |
| 4134287 | 131.2.1.2 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_arg_C,PolyA_pol_RNAbd | 0.84 | 78.0 | 5.88e-01 | 100.0% | 62.4% |
| 3839665 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.83 | 77.0 | 5.82e-01 | 100.0% | 45.3% |
| 3429759 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.83 | 77.0 | 5.57e-01 | 100.0% | 77.6% |
| 3965663 | 131.2.1.2 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_arg_C,PolyA_pol_RNAbd | 0.78 | 71.0 | 5.41e-01 | 100.0% | 59.2% |
| 3257617 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.55 | 49.0 | 3.36e-01 | 100.0% | 30.5% |
| 3543063 | 109.4.1.1805 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_EZ, HEAT_GCN1 | 0.54 | 47.0 | 3.70e-01 | 100.0% | 66.5% |
| 4588743 | 109.4.1.1558 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF2428, TPR_Trm732, TPR_Trm732_C | 0.53 | 46.0 | 2.55e-01 | 100.0% | 9.6% |
| 3663725 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 44.0 | 3.58e-01 | 99.1% | 56.7% |
| 4272840 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.51 | 35.0 | 3.01e-01 | 97.3% | 43.2% |
| 4332068 | 109.4.1.758 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Med26 | 0.50 | 43.0 | 3.92e-01 | 100.0% | 81.8% |
D5
medium
residues 410-530
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pz9A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.62 | 50.0 | 4.40e-01 | 86.8% | 96.6% |
| 1zk8B02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 44.0 | 4.31e-01 | 82.6% | 93.9% |
| 1t33A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 43.0 | 3.97e-01 | 81.8% | 93.7% |
| 4g1tA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 29.0 | 3.75e-01 | 79.3% | 96.7% |
| 1uddA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.55 | 38.0 | 3.18e-01 | 70.2% | 83.7% |
| 5lnkJ01 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.53 | 32.0 | 2.89e-01 | 82.6% | 42.6% |
| 2f07B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 43.0 | 3.73e-01 | 88.4% | 89.3% |
| 2j9wB00 | 1.20.120.1130 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain | 0.53 | 33.0 | 3.55e-01 | 86.0% | 74.7% |
| 2v57A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 44.0 | 3.93e-01 | 93.4% | 99.4% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.51 | 34.0 | 3.78e-01 | 71.1% | 87.9% |
| 1xo0A01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.50 | 35.0 | 3.63e-01 | 71.1% | 82.9% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4275218 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.79 | 72.0 | 5.58e-01 | 98.3% | 49.2% |
| 4033097 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.76 | 69.0 | 5.36e-01 | 99.2% | 65.8% |
| 3839665 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.75 | 68.0 | 5.40e-01 | 100.0% | 53.1% |
| 4044665 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.74 | 68.0 | 5.29e-01 | 100.0% | 49.4% |
| 4583076 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.73 | 67.0 | 5.26e-01 | 100.0% | 53.9% |
| 4196298 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.72 | 67.0 | 5.18e-01 | 100.0% | 76.9% |
| 4146848 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.72 | 66.0 | 5.11e-01 | 99.2% | 49.6% |
| 4944307 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.70 | 63.0 | 4.79e-01 | 99.2% | 70.0% |
| 3706565 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 39.0 | 2.99e-01 | 80.2% | 84.1% |
| 3734601 | 3788.1.1.17 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › PF30848 | 0.50 | 29.0 | 2.70e-01 | 81.8% | 43.1% |