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LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00202
Bact-VirLacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00202
Identity
- Kingdom:
- phage
Quality
90.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-71
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3r4iA02 | 6.10.140.960 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 41.0 | 4.29e-01 | 79.7% | 80.0% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 44.0 | 3.86e-01 | 79.7% | 56.6% |
| 2dfuA01 | 2.30.30.370 | Mainly Beta › Roll › SH3 type barrels. › FAH | 0.59 | 36.0 | 4.44e-01 | 88.4% | 100.0% |
| 4fymF00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 40.0 | 2.84e-01 | 100.0% | 23.9% |
| 3rklA00 | 6.10.140.1640 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 46.0 | 4.48e-01 | 94.2% | 95.0% |
| 5jcpB01 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.56 | 46.0 | 3.44e-01 | 95.7% | 41.0% |
| 2ci9B00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 42.0 | 3.74e-01 | 82.6% | 63.0% |
| 1kgqA01 | 1.10.166.10 | Mainly Alpha › Orthogonal Bundle › Tetrahydrodipicolinate-N-succinyltransferase; Chain A, domain 1 › Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain | 0.55 | 43.0 | 4.34e-01 | 87.0% | 88.6% |
| 2wweA01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.55 | 44.0 | 3.93e-01 | 91.3% | 63.5% |
| 1dkqA02 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.55 | 46.0 | 3.93e-01 | 100.0% | 85.5% |
| 4c0kA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.54 | 38.0 | 3.35e-01 | 79.7% | 50.5% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 39.0 | 3.46e-01 | 79.7% | 61.5% |
| 4oxwA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.54 | 44.0 | 3.86e-01 | 91.3% | 61.3% |
| 4arvA02 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.54 | 46.0 | 3.88e-01 | 100.0% | 85.7% |
| 1wdcC01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.53 | 36.0 | 3.52e-01 | 71.0% | 85.9% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 3.34e-01 | 81.2% | 75.0% |
| 1qhuA01 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.53 | 43.0 | 3.14e-01 | 100.0% | 33.3% |
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 43.0 | 3.09e-01 | 94.2% | 85.8% |
| 2xp1A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.52 | 37.0 | 3.39e-01 | 75.4% | 98.9% |
| 2kgsA01 | 3.40.1520.20 | Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › | 0.52 | 36.0 | 3.12e-01 | 100.0% | 45.5% |
| 3k6qA02 | 3.30.160.620 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 45.0 | 4.14e-01 | 97.1% | 92.1% |
| 1i7dA02 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.52 | 45.0 | 3.39e-01 | 100.0% | 88.3% |
| 5hvqC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 37.0 | 3.42e-01 | 79.7% | 64.3% |
| 3q23A08 | 1.20.140.110 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.51 | 45.0 | 3.43e-01 | 97.1% | 95.5% |
| 4hwmA00 | 2.40.128.500 | Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein | 0.51 | 36.0 | 3.16e-01 | 78.3% | 85.5% |
| 4gycA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.50 | 43.0 | 3.06e-01 | 97.1% | 73.2% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 136506 | 4075.1.1.2 ↗ | a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 | 0.72 | 62.0 | 5.53e-01 | 97.1% | 100.0% |
| 3593719 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.70 | 49.0 | 3.54e-01 | 78.3% | 27.0% |
| 3264756 | 4075.1.1.2 ↗ | a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 | 0.68 | 60.0 | 5.33e-01 | 100.0% | 98.0% |
| 3237398 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.67 | 47.0 | 4.16e-01 | 73.9% | 54.0% |
| 3714994 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.66 | 46.0 | 3.31e-01 | 78.3% | 25.6% |
| 4067146 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 42.0 | 5.01e-01 | 87.0% | 100.0% |
| 3299780 | 109.2.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_9 | 0.66 | 54.0 | 3.23e-01 | 92.8% | 14.1% |
| 4272595 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 45.0 | 5.07e-01 | 87.0% | 98.0% |
| 4617429 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 45.0 | 4.88e-01 | 88.4% | 92.7% |
| 5023013 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.62 | 50.0 | 3.60e-01 | 91.3% | 35.3% |
| 3334308 | 109.2.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_9 | 0.61 | 50.0 | 3.09e-01 | 95.7% | 15.6% |
| 4012787 | 3454.1.1.0 ↗ | beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like | 0.60 | 47.0 | 4.94e-01 | 98.6% | 96.7% |
| 3787647 | 192.2.1.31 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PRA1 | 0.59 | 40.0 | 3.56e-01 | 76.8% | 48.0% |
| 3996808 | 3749.1.1.6 ↗ | extended segments › 26S proteasome regulatory subunits C-terminal helices › 26S proteasome regulatory subunit RPN9 C-terminal helix › 26S proteasome regulatory subunit RPN9 C-terminal helix › Pepsin-I3 | 0.59 | 36.0 | 3.66e-01 | 100.0% | 60.0% |
| 3687323 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.59 | 48.0 | 4.91e-01 | 100.0% | 95.4% |
| 3605428 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.58 | 43.0 | 3.01e-01 | 78.3% | 49.3% |
| 3916907 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.57 | 45.0 | 3.05e-01 | 88.4% | 68.4% |
| 4659871 | 3001.1.1.1 ↗ | alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 | 0.57 | 48.0 | 4.34e-01 | 92.8% | 70.5% |
| 3598773 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.57 | 49.0 | 3.51e-01 | 100.0% | 46.4% |
| 3947868 | 2484.1.1.87 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MreB-like_C | 0.57 | 40.0 | 3.09e-01 | 95.7% | 30.9% |
| 3646228 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.57 | 49.0 | 3.74e-01 | 95.7% | 91.3% |
| 149832 | 5055.1.1.0 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel | 0.56 | 46.0 | 4.48e-01 | 94.2% | 95.0% |
| 3606470 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.56 | 48.0 | 3.56e-01 | 100.0% | 54.9% |
| 3702712 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.56 | 48.0 | 3.48e-01 | 100.0% | 47.4% |
| 4217425 | 101.1.2.304 ↗ | alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase | 0.56 | 39.0 | 3.61e-01 | 72.5% | 58.9% |
| 4257661 | 3001.1.1.1 ↗ | alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 | 0.56 | 46.0 | 4.26e-01 | 91.3% | 85.6% |
| 3784232 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.55 | 45.0 | 3.56e-01 | 89.9% | 51.7% |
| 3266842 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.55 | 43.0 | 3.54e-01 | 84.1% | 70.4% |
| 4104885 | 3001.1.1.1 ↗ | alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 | 0.55 | 45.0 | 4.09e-01 | 91.3% | 68.4% |
| 3554073 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.55 | 46.0 | 3.71e-01 | 91.3% | 56.9% |
| 4599024 | 3001.1.1.1 ↗ | alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 | 0.55 | 45.0 | 4.26e-01 | 92.8% | 76.5% |
| 4337722 | 3001.1.1.1 ↗ | alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 | 0.55 | 45.0 | 4.25e-01 | 92.8% | 75.3% |
| 3602833 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.54 | 46.0 | 3.09e-01 | 97.1% | 98.3% |
| 3406592 | 109.4.1.1403 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TBCD, ARM_TBCD_2nd | 0.53 | 44.0 | 2.67e-01 | 92.8% | 14.5% |
| 2439674 | 2002.1.1.300 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI, C-C_Bond_Lyase | 0.53 | 46.0 | 3.13e-01 | 100.0% | 26.9% |
| 3390398 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.53 | 39.0 | 3.18e-01 | 81.2% | 45.7% |
| 5040463 | 2002.1.1.111 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI | 0.52 | 44.0 | 2.99e-01 | 98.6% | 99.0% |
| 4014117 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.51 | 42.0 | 2.83e-01 | 97.1% | 23.9% |
| 3220873 | 214.1.1.9 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7063 | 0.51 | 38.0 | 3.41e-01 | 81.2% | 86.0% |
| 4340567 | 2003.2.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin | 0.51 | 44.0 | 2.81e-01 | 100.0% | 61.8% |
| 4990134 | 2002.1.1.111 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI | 0.51 | 41.0 | 2.88e-01 | 97.1% | 27.4% |
| 4127245 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.51 | 35.0 | 3.66e-01 | 81.2% | 78.5% |
| 4312528 | 2003.2.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin | 0.50 | 44.0 | 2.79e-01 | 100.0% | 60.5% |
| 3839783 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.50 | 40.0 | 3.70e-01 | 100.0% | 68.2% |
| 3187789 | 2002.1.1.111 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI | 0.50 | 41.0 | 2.77e-01 | 100.0% | 24.8% |
| 4108476 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.50 | 39.0 | 3.34e-01 | 95.7% | 52.7% |