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LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00209
Bact-VirLacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00209
Identity
- Kingdom:
- phage
Quality
87.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-67
Domain cluster:
rep: MG049919.1__ATN94147.1__FLXISF001_069__00069__D2-58
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 62.0 | 6.02e-01 | 82.8% | 100.0% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 61.0 | 6.14e-01 | 82.8% | 100.0% |
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 55.0 | 5.61e-01 | 73.4% | 100.0% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 56.0 | 5.66e-01 | 75.0% | 100.0% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 57.0 | 5.71e-01 | 79.7% | 100.0% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 53.0 | 5.02e-01 | 81.2% | 96.0% |
| 2cw5A02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.61 | 44.0 | 3.96e-01 | 76.6% | 92.1% |
| 3udcA02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 41.0 | 4.56e-01 | 85.9% | 100.0% |
| 4p0dA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 47.0 | 3.57e-01 | 100.0% | 62.4% |
| 1smpI00 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 37.0 | 3.28e-01 | 73.4% | 76.0% |
| 5ccbA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.54 | 41.0 | 3.97e-01 | 81.2% | 97.2% |
| 1kiuB01 | 2.60.40.1090 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain | 0.54 | 46.0 | 3.53e-01 | 100.0% | 55.3% |
| 1sb7A02 | 3.30.2340.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › TruD, insertion domain | 0.54 | 46.0 | 3.69e-01 | 100.0% | 72.1% |
| 1o54A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.53 | 38.0 | 3.68e-01 | 75.0% | 93.1% |
| 4cvuA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 44.0 | 3.21e-01 | 100.0% | 62.3% |
| 2gqtA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.52 | 42.0 | 3.60e-01 | 98.4% | 85.1% |
| 2kv8A00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.51 | 42.0 | 3.92e-01 | 96.9% | 97.6% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4028885 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.83 | 61.0 | 6.15e-01 | 78.1% | 100.0% |
| 4284764 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.82 | 61.0 | 6.07e-01 | 78.1% | 100.0% |
| 3265170 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.82 | 61.0 | 6.06e-01 | 78.1% | 100.0% |
| 4073200 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.81 | 59.0 | 5.88e-01 | 76.6% | 100.0% |
| 3599172 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.80 | 60.0 | 5.98e-01 | 78.1% | 100.0% |
| 4077367 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.80 | 57.0 | 5.76e-01 | 75.0% | 100.0% |
| 4524363 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.80 | 60.0 | 5.96e-01 | 78.1% | 100.0% |
| 4038269 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.80 | 59.0 | 5.95e-01 | 78.1% | 100.0% |
| 3306779 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.80 | 59.0 | 5.96e-01 | 78.1% | 100.0% |
| 4345080 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.80 | 60.0 | 5.97e-01 | 78.1% | 100.0% |
| 4292289 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.80 | 59.0 | 5.94e-01 | 78.1% | 100.0% |
| 4946993 | 4.1.1.479 ↗ | beta barrels › SH3 › SH3 › SH3 › eIF-5a | 0.80 | 63.0 | 6.14e-01 | 84.4% | 100.0% |
| 4158157 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.80 | 59.0 | 5.92e-01 | 78.1% | 100.0% |
| 3948467 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.80 | 57.0 | 5.71e-01 | 75.0% | 100.0% |
| 4201878 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.79 | 59.0 | 5.88e-01 | 78.1% | 100.0% |
| 4037383 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.79 | 59.0 | 5.87e-01 | 78.1% | 100.0% |
| 4419948 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.79 | 59.0 | 5.88e-01 | 78.1% | 100.0% |
| 3483489 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 61.0 | 5.82e-01 | 82.8% | 92.0% |
| 4101580 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.79 | 58.0 | 5.84e-01 | 78.1% | 100.0% |
| 4931072 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.79 | 62.0 | 6.02e-01 | 84.4% | 100.0% |
| 4997059 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.78 | 62.0 | 5.91e-01 | 85.9% | 100.0% |
| 4942589 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.78 | 59.0 | 5.70e-01 | 79.7% | 100.0% |
| 4146937 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.77 | 57.0 | 5.71e-01 | 78.1% | 100.0% |
| 3643549 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.77 | 59.0 | 5.46e-01 | 81.2% | 85.0% |
| 4213539 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.77 | 57.0 | 5.69e-01 | 78.1% | 100.0% |
| 4086925 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.77 | 58.0 | 5.77e-01 | 79.7% | 100.0% |
| 142633 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.77 | 57.0 | 5.71e-01 | 79.7% | 100.0% |
| 3590827 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.77 | 56.0 | 5.64e-01 | 78.1% | 100.0% |
| 4952390 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.72 | 55.0 | 4.98e-01 | 81.2% | 100.0% |
| 4010317 | 4.1.1.395 ↗ | beta barrels › SH3 › SH3 › SH3 › PF27398 | 0.71 | 61.0 | 6.12e-01 | 100.0% | 92.3% |
| 4931618 | 3457.1.1.1 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 | 0.70 | 60.0 | 4.12e-01 | 95.3% | 35.3% |
| 4963049 | 4.1.1.486 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7098 | 0.67 | 45.0 | 4.25e-01 | 70.3% | 91.3% |
| 4182977 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.63 | 45.0 | 4.62e-01 | 75.0% | 85.0% |
| 4163756 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.60 | 50.0 | 4.44e-01 | 95.3% | 94.7% |
| 4986214 | 1.1.4.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C | 0.59 | 42.0 | 3.75e-01 | 76.6% | 94.7% |
| 4405079 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.58 | 48.0 | 4.28e-01 | 95.3% | 95.8% |
| 4662737 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.56 | 48.0 | 4.35e-01 | 100.0% | 96.7% |
| 4438946 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.54 | 46.0 | 4.23e-01 | 98.4% | 100.0% |
| 4185030 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.53 | 45.0 | 4.01e-01 | 98.4% | 94.7% |
| 3983246 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.53 | 45.0 | 4.05e-01 | 100.0% | 90.5% |
| 4682440 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.53 | 45.0 | 4.04e-01 | 100.0% | 92.6% |
| 4193394 | 10.12.1.17 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N | 0.52 | 44.0 | 2.90e-01 | 100.0% | 46.5% |
| 4220217 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.52 | 45.0 | 3.99e-01 | 100.0% | 90.5% |
| 3971702 | 1.1.7.80 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C | 0.52 | 41.0 | 3.58e-01 | 87.5% | 73.0% |
| 3388146 | 1.1.7.80 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C | 0.52 | 41.0 | 3.83e-01 | 95.3% | 92.0% |
| 3623622 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 39.0 | 3.89e-01 | 87.5% | 94.3% |
| 4218541 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 33.0 | 3.55e-01 | 85.9% | 93.3% |
| 4138546 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.50 | 42.0 | 3.88e-01 | 100.0% | 98.9% |