←Back to structures

LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00234

Bact-Vir

LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00234

Identity

Kingdom:
phage

Quality

71.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-81
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ebiA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 49.0 5.24e-01 78.9% 93.9%
7dg2C01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.65 46.0 4.70e-01 76.3% 78.7%
2p0tA02 1.10.60.30 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains 0.63 44.0 4.54e-01 92.1% 77.8%
1abvA00 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.62 50.0 4.60e-01 100.0% 65.7%
1sedA00 1.10.3750.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein YhaI fold › YhaI-like 0.62 42.0 3.76e-01 71.1% 52.7%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 4.26e-01 78.9% 72.6%
7eqeB01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 50.0 3.96e-01 100.0% 51.5%
5xdcB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.58 50.0 4.50e-01 100.0% 70.3%
6vvoE02 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.57 46.0 4.24e-01 88.2% 80.8%
2pbiA02 1.10.1240.60 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.56 45.0 4.18e-01 89.5% 68.3%
3t46A00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.55 36.0 3.66e-01 81.6% 68.0%
4pxoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 37.0 3.23e-01 76.3% 91.6%
3if8B02 1.20.58.730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 41.0 3.81e-01 85.5% 78.0%
3k53A02 1.10.287.1770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 38.0 3.55e-01 88.2% 63.3%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3272135 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.74 54.0 5.77e-01 82.9% 90.8%
3632341 101.1.1.176 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DEK_C 0.72 53.0 5.60e-01 78.9% 100.0%
4934619 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.71 59.0 6.06e-01 96.1% 100.0%
4994779 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.68 55.0 5.37e-01 89.5% 97.6%
3782008 101.1.17.19 ↗ alpha arrays › HTH › HTH › FF domain › DEK_C 0.67 51.0 5.45e-01 82.9% 100.0%
4607429 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.66 59.0 4.07e-01 100.0% 63.5%
3792105 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.66 48.0 5.30e-01 77.6% 100.0%
3447076 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 53.0 5.09e-01 90.8% 91.1%
3283171 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.65 48.0 4.94e-01 96.1% 85.7%
168860 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.64 47.0 4.82e-01 92.1% 81.1%
3711934 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 49.0 4.74e-01 86.8% 75.6%
3646654 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 55.0 4.74e-01 97.4% 90.0%
3455132 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.63 55.0 4.73e-01 97.4% 90.0%
3962482 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 45.0 4.80e-01 94.7% 90.8%
3165861 5051.1.1.1 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SNF 0.63 53.0 3.37e-01 100.0% 66.9%
4390290 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.60 46.0 4.90e-01 98.7% 95.4%
3616432 7579.1.1.89 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE 0.57 44.0 2.63e-01 82.9% 26.3%
3383195 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 50.0 3.60e-01 98.7% 66.8%
3716897 183.1.1.0 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.57 45.0 4.55e-01 94.7% 88.0%
3257188 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.56 40.0 3.35e-01 72.4% 65.4%
3410177 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 45.0 4.18e-01 93.4% 86.0%
3610460 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.54 43.0 4.24e-01 88.2% 92.5%
4026671 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.53 38.0 3.38e-01 77.6% 77.4%