←Back to structures
LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00245
Bact-VirLacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00245
Identity
- Kingdom:
- phage
Quality
92.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-61
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kyxA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.74 | 51.0 | 3.81e-01 | 72.9% | 61.9% |
| 4dywA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.71 | 49.0 | 3.77e-01 | 72.9% | 65.9% |
| 2b0vA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.70 | 49.0 | 3.63e-01 | 72.9% | 57.4% |
| 3a6sA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.57 | 41.0 | 3.29e-01 | 78.0% | 65.6% |
| 2azwA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.56 | 47.0 | 3.63e-01 | 98.3% | 67.8% |
| 4j7hA02 | 3.90.79.40 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › EvaA sugar 2,3-dehydratase subunit | 0.53 | 37.0 | 2.77e-01 | 72.9% | 55.8% |
| 6ks6B02 | 3.30.260.10 | Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain | 0.53 | 45.0 | 3.68e-01 | 100.0% | 59.8% |
| 6ks6Z02 | 3.30.260.10 | Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain | 0.53 | 44.0 | 3.75e-01 | 100.0% | 56.1% |
| 2q2gB02 | 2.60.260.20 | Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain | 0.51 | 36.0 | 3.27e-01 | 74.6% | 86.1% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4937163 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.73 | 50.0 | 3.83e-01 | 72.9% | 64.4% |
| 1893388 | 237.1.1.8 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox | 0.61 | 46.0 | 3.18e-01 | 83.1% | 49.3% |
| 3987874 | 375.1.1.253 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-IS66 | 0.55 | 42.0 | 3.94e-01 | 84.7% | 74.7% |
| 3027346 | 706.2.1.2 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G | 0.55 | 40.0 | 3.13e-01 | 78.0% | 37.5% |
| 860411 | 706.2.1.3 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › SasG_E | 0.54 | 40.0 | 4.22e-01 | 78.0% | 94.1% |
| 3932820 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.52 | 38.0 | 2.55e-01 | 78.0% | 27.7% |
| 4214934 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.52 | 42.0 | 4.02e-01 | 96.6% | 78.6% |
| 3926198 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.51 | 46.0 | 3.01e-01 | 100.0% | 45.6% |
| 3649477 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.51 | 36.0 | 2.89e-01 | 74.6% | 40.8% |
| 3501262 | 101.1.6.18 ↗ | alpha arrays › HTH › HTH › TrpR › Zn_ribbon_ISL3 | 0.51 | 39.0 | 2.95e-01 | 83.1% | 39.3% |
| 3674451 | 294.1.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › potato_inhibit | 0.51 | 34.0 | 3.33e-01 | 100.0% | 63.1% |
| 4117817 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.51 | 40.0 | 3.92e-01 | 93.2% | 81.5% |
| 3590401 | 375.1.1.90 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ISL3 | 0.50 | 38.0 | 2.87e-01 | 81.4% | 41.4% |
| 1831278 | 294.1.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › potato_inhibit | 0.50 | 34.0 | 3.29e-01 | 98.3% | 62.7% |