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LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00263

Bact-Vir

LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00263

Identity

Kingdom:
phage

Quality

92.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-58
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3o6xA02 1.20.120.1560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.66 44.0 3.30e-01 70.2% 74.3%
1ni5A02 1.20.59.20 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › 0.61 51.0 4.48e-01 94.7% 86.0%
3f2bA05 6.10.50.10 Special › Helix non-globular › Insulin-like, subunit E › 0.60 39.0 4.16e-01 77.2% 77.1%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.60 37.0 3.65e-01 100.0% 55.7%
2r1iA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 43.0 3.24e-01 75.4% 86.2%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.58 39.0 2.97e-01 70.2% 82.1%
4arvA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.53 44.0 3.52e-01 100.0% 88.9%
2m3aA00 1.10.10.1900 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Knl-2 Myb-like DNA-binding domain-like 0.52 37.0 3.61e-01 96.5% 67.2%
2hl7A00 1.10.8.640 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Cytochrome C biogenesis protein 0.52 45.0 4.06e-01 100.0% 70.7%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.51 36.0 2.89e-01 75.4% 78.7%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4519945 101.1.14.4 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › PF31232 0.64 51.0 5.26e-01 100.0% 94.4%
3192164 109.4.1.1827 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27826 0.62 44.0 2.98e-01 75.4% 47.4%
3222971 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.62 43.0 2.79e-01 75.4% 16.2%
3298181 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 32.0 3.58e-01 87.7% 66.7%
3515315 865.1.1.0 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain 0.55 42.0 2.80e-01 84.2% 27.8%
3349141 375.1.1.182 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7086 0.54 44.0 3.40e-01 94.7% 54.3%
3620174 864.1.1.1 ↗ a+b two layers › DLC › DLC › DLC › Dynein_light 0.54 41.0 3.59e-01 86.0% 71.1%
4961283 101.1.2.935 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_B0008_C 0.54 41.0 3.37e-01 84.2% 77.1%
4369892 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.52 36.0 3.62e-01 98.2% 71.7%
3622513 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 44.0 4.35e-01 100.0% 91.7%
3487367 10.12.1.51 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 0.51 42.0 2.68e-01 94.7% 65.6%
3594656 195.1.1.0 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like 0.51 36.0 2.97e-01 94.7% 39.1%