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LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00264
Bact-VirLacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00264
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-112
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b7tA02 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.70 | 38.0 | 4.99e-01 | 81.8% | 100.0% |
| 2mysA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.68 | 34.0 | 4.71e-01 | 73.7% | 100.0% |
| 2e70A00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 39.0 | 4.57e-01 | 72.7% | 81.7% |
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 36.0 | 4.36e-01 | 71.7% | 85.9% |
| 2vb6A01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.63 | 35.0 | 4.58e-01 | 79.8% | 100.0% |
| 3fb9B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 40.0 | 4.29e-01 | 72.7% | 77.4% |
| 3feoB02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 37.0 | 4.03e-01 | 71.7% | 73.5% |
| 4n4iA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 35.0 | 3.73e-01 | 81.8% | 64.4% |
| 3ceyB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 38.0 | 3.38e-01 | 71.7% | 44.7% |
| 2gs5A01 | 3.40.1740.10 | Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like | 0.58 | 42.0 | 3.41e-01 | 74.7% | 95.2% |
| 2l1tA00 | 2.30.110.70 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.58 | 40.0 | 3.92e-01 | 71.7% | 89.0% |
| 3a2yA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.57 | 49.0 | 4.01e-01 | 94.9% | 85.4% |
| 3k8uA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.56 | 47.0 | 4.29e-01 | 90.9% | 74.8% |
| 2kgyA00 | 3.30.505.20 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › | 0.56 | 40.0 | 4.15e-01 | 75.8% | 94.6% |
| 7afrX02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.55 | 33.0 | 4.00e-01 | 72.7% | 96.7% |
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.55 | 34.0 | 4.04e-01 | 72.7% | 92.5% |
| 4g54A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.55 | 41.0 | 3.87e-01 | 88.9% | 64.0% |
| 3d4eA01 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.55 | 34.0 | 3.65e-01 | 79.8% | 72.6% |
| 4c5eC02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 38.0 | 3.85e-01 | 70.7% | 85.4% |
| 2vobB02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.54 | 46.0 | 3.68e-01 | 98.0% | 83.6% |
| 3u0aA00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.54 | 38.0 | 2.88e-01 | 75.8% | 55.5% |
| 1lckA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 32.0 | 3.94e-01 | 77.8% | 100.0% |
| 2h36X00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 34.0 | 3.36e-01 | 76.8% | 59.3% |
| 2vsmA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.52 | 41.0 | 2.82e-01 | 88.9% | 86.0% |
| 4wfvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 35.0 | 3.14e-01 | 71.7% | 82.4% |
| 2in5A00 | 2.40.360.10 | Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like | 0.51 | 41.0 | 3.28e-01 | 85.9% | 90.8% |
| 3djwA00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 33.0 | 3.44e-01 | 76.8% | 69.5% |
| 2zovA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.51 | 41.0 | 3.51e-01 | 87.9% | 86.7% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3261395 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 38.0 | 4.88e-01 | 71.7% | 96.6% |
| 3854862 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.67 | 37.0 | 3.78e-01 | 70.7% | 55.8% |
| 4027422 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.66 | 36.0 | 4.66e-01 | 70.7% | 96.4% |
| 3484822 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.62 | 38.0 | 4.23e-01 | 73.7% | 76.2% |
| 2321269 | 4.1.1.46 ↗ | beta barrels › SH3 › SH3 › SH3 › VEG | 0.61 | 40.0 | 4.29e-01 | 72.7% | 77.4% |
| 3217772 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 36.0 | 3.91e-01 | 70.7% | 69.4% |
| 4654204 | 4.1.1.52 ↗ | beta barrels › SH3 › SH3 › SH3 › ZapC_C | 0.60 | 41.0 | 4.29e-01 | 71.7% | 76.4% |
| 3326980 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.60 | 36.0 | 4.57e-01 | 71.7% | 100.0% |
| 5077969 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 42.0 | 4.67e-01 | 93.9% | 90.0% |
| 3928711 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 36.0 | 3.91e-01 | 71.7% | 70.6% |
| 4002631 | 868.1.1.0 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related | 0.60 | 43.0 | 3.77e-01 | 80.8% | 50.3% |
| 3699652 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 38.0 | 4.51e-01 | 71.7% | 98.5% |
| 3795384 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 37.0 | 2.88e-01 | 71.7% | 29.3% |
| 3492982 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.59 | 38.0 | 3.48e-01 | 93.9% | 48.9% |
| 4011604 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.58 | 35.0 | 4.00e-01 | 70.7% | 81.3% |
| 3187350 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 36.0 | 4.18e-01 | 78.8% | 93.8% |
| 3241890 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 39.0 | 3.89e-01 | 71.7% | 68.0% |
| 3642001 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.56 | 39.0 | 4.50e-01 | 71.7% | 100.0% |
| 3576940 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 39.0 | 2.97e-01 | 71.7% | 33.8% |
| 4559371 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 34.0 | 4.10e-01 | 72.7% | 95.2% |
| 4261492 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.56 | 46.0 | 4.18e-01 | 89.9% | 66.7% |
| 3587906 | 4.1.1.46 ↗ | beta barrels › SH3 › SH3 › SH3 › VEG | 0.56 | 38.0 | 4.17e-01 | 73.7% | 86.3% |
| 3182025 | 4.1.1.475 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26640 | 0.55 | 40.0 | 3.65e-01 | 84.8% | 55.6% |
| 3398765 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.54 | 37.0 | 2.85e-01 | 70.7% | 83.1% |
| 3629316 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 37.0 | 3.76e-01 | 70.7% | 89.0% |
| 3342814 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.53 | 37.0 | 3.86e-01 | 71.7% | 86.3% |
| 4539244 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.53 | 37.0 | 3.72e-01 | 73.7% | 85.7% |
| 3354387 | 4.1.1.217 ↗ | beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 | 0.53 | 36.0 | 3.92e-01 | 70.7% | 92.9% |
| 490 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.53 | 35.0 | 3.94e-01 | 71.7% | 90.5% |
| 3576800 | 708.1.1.16 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC | 0.53 | 41.0 | 4.23e-01 | 81.8% | 93.7% |
| 3214653 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 36.0 | 3.72e-01 | 70.7% | 95.8% |
| 3631165 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 38.0 | 4.08e-01 | 76.8% | 89.4% |
| 3621272 | 708.1.1.16 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC | 0.52 | 41.0 | 3.66e-01 | 82.8% | 84.4% |
| 3950458 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.51 | 35.0 | 2.89e-01 | 70.7% | 51.1% |
| 5018860 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.51 | 44.0 | 3.89e-01 | 97.0% | 84.7% |
| 3617111 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.51 | 39.0 | 4.12e-01 | 98.0% | 88.9% |
| 3639280 | 6.1.1.36 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › RNaseT2L_C | 0.51 | 35.0 | 3.33e-01 | 72.7% | 100.0% |
| 365513 | 331.15.1.1 ↗ | a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 › DUF1374 | 0.51 | 34.0 | 3.46e-01 | 79.8% | 69.7% |