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LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00266
Bact-VirLacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00266
Identity
- Kingdom:
- phage
Quality
83.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-85
Domain cluster:
rep: hypothetical_protein_PGCG_00195__YP_008052513__Phaeocystis_globosa_virus__251749__D2-103
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c5iD01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.62 | 46.0 | 4.83e-01 | 78.6% | 93.4% |
| 2icgA00 | 3.40.1580.10 | Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like | 0.62 | 36.0 | 2.88e-01 | 76.2% | 30.2% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.60 | 36.0 | 4.19e-01 | 98.8% | 96.0% |
| 1g2bA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 34.0 | 3.90e-01 | 84.5% | 79.0% |
| 2ylmA03 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.58 | 46.0 | 4.42e-01 | 86.9% | 100.0% |
| 3njcA00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.58 | 49.0 | 4.09e-01 | 96.4% | 95.4% |
| 1z0mA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 40.0 | 4.03e-01 | 78.6% | 95.4% |
| 3rm5B01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.55 | 41.0 | 2.85e-01 | 81.0% | 77.3% |
| 3a2yA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.54 | 42.0 | 3.24e-01 | 82.1% | 38.4% |
| 2qn5B01 | 2.10.69.10 | Mainly Beta › Ribbon › Cysteine Protease (Bromelain) Inhibitor, subunit H › Cysteine Protease (Bromelain) Inhibitor, subunit H | 0.54 | 32.0 | 3.77e-01 | 89.3% | 90.7% |
| 2la7A01 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 48.0 | 4.17e-01 | 100.0% | 94.5% |
| 1fhoA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 45.0 | 4.07e-01 | 100.0% | 68.1% |
| 1mk1A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.53 | 45.0 | 3.60e-01 | 98.8% | 89.3% |
| 7plsA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 37.0 | 3.66e-01 | 75.0% | 100.0% |
| 5hmaA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 37.0 | 3.70e-01 | 75.0% | 88.5% |
| 2pzhA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 42.0 | 3.66e-01 | 88.1% | 70.1% |
| 2d4rA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 41.0 | 3.42e-01 | 90.5% | 49.3% |
| 4i86A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.51 | 36.0 | 3.44e-01 | 75.0% | 73.5% |
| 2aiqA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 38.0 | 3.51e-01 | 81.0% | 89.4% |
| 3fkdA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 45.0 | 4.10e-01 | 97.6% | 85.7% |
| 3cp7B02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.50 | 38.0 | 3.59e-01 | 83.3% | 89.5% |
| 5jv4A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 43.0 | 3.69e-01 | 98.8% | 97.9% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4228206 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.68 | 54.0 | 5.53e-01 | 91.7% | 87.5% |
| 4678749 | 306.1.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB | 0.63 | 44.0 | 4.84e-01 | 96.4% | 93.8% |
| 4934178 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.62 | 50.0 | 4.40e-01 | 88.1% | 91.4% |
| 4033832 | 3425.2.1.2 ↗ | a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain › YycI | 0.60 | 51.0 | 3.76e-01 | 94.0% | 37.0% |
| 3677415 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.58 | 43.0 | 3.87e-01 | 90.5% | 55.8% |
| 3521199 | 220.1.1.26 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II | 0.57 | 50.0 | 4.36e-01 | 98.8% | 70.8% |
| 3722154 | 301.8.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS | 0.57 | 47.0 | 3.73e-01 | 89.3% | 86.7% |
| 3604640 | 3740.1.1.1 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N,FrhB_FdhB_C | 0.57 | 39.0 | 2.79e-01 | 78.6% | 23.5% |
| 3751173 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.56 | 46.0 | 4.84e-01 | 100.0% | 100.0% |
| 3637683 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 49.0 | 3.76e-01 | 98.8% | 66.7% |
| 3781067 | 708.1.1.5 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › AFT | 0.55 | 46.0 | 4.23e-01 | 91.7% | 85.5% |
| 6168 | 221.1.1.54 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ras_bdg_2 | 0.54 | 44.0 | 4.46e-01 | 91.7% | 91.5% |
| 3334698 | 708.1.1.8 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 | 0.54 | 46.0 | 4.10e-01 | 94.0% | 75.0% |
| 3392305 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 47.0 | 4.35e-01 | 98.8% | 80.9% |
| 4013235 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.52 | 33.0 | 3.84e-01 | 97.6% | 98.2% |
| 3930230 | 331.4.1.5 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1_BRSK | 0.52 | 43.0 | 3.91e-01 | 90.5% | 68.7% |
| 5028595 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.52 | 41.0 | 3.44e-01 | 90.5% | 88.1% |
| 5051779 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.52 | 41.0 | 3.81e-01 | 90.5% | 66.4% |
| 3378914 | 331.3.1.43 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C | 0.51 | 44.0 | 3.20e-01 | 95.2% | 65.8% |
| 3917491 | 331.4.1.5 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1_BRSK | 0.51 | 43.0 | 3.66e-01 | 90.5% | 66.7% |
| 3700926 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.51 | 45.0 | 3.61e-01 | 100.0% | 90.5% |
| 3283644 | 301.8.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS | 0.51 | 43.0 | 3.98e-01 | 95.2% | 88.2% |
| 3503446 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.50 | 44.0 | 3.51e-01 | 98.8% | 58.9% |
| 3631248 | 220.1.1.20 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH | 0.50 | 45.0 | 3.93e-01 | 100.0% | 73.6% |