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LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00287

Bact-Vir

LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00287

Identity

Kingdom:
phage

Quality

81.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-72
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jhnA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.73 62.0 5.25e-01 92.9% 77.0%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.71 62.0 5.27e-01 95.7% 76.8%
3f8xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 54.0 4.38e-01 81.4% 49.2%
5bv3D01 3.30.200.40 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Scavenger mRNA decapping enzyme, N-terminal domain 0.70 47.0 4.04e-01 70.0% 82.1%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.68 58.0 5.40e-01 95.7% 75.3%
1u9tA02 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.68 47.0 3.52e-01 72.9% 65.1%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.67 49.0 5.09e-01 77.1% 88.9%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 42.0 4.05e-01 70.0% 55.6%
3t4nA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.66 56.0 5.09e-01 95.7% 77.1%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 51.0 4.45e-01 87.1% 76.9%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.64 42.0 3.77e-01 90.0% 47.0%
7szeB02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.64 56.0 4.16e-01 100.0% 60.3%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.63 54.0 4.55e-01 100.0% 56.2%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.61 46.0 4.11e-01 81.4% 88.2%
2wzoA01 3.30.160.360 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 51.0 4.15e-01 94.3% 82.7%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.59 43.0 4.15e-01 80.0% 66.7%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 51.0 4.20e-01 100.0% 73.3%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.59 44.0 4.12e-01 91.4% 64.4%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.58 50.0 4.09e-01 100.0% 89.3%
5a67A00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.58 46.0 3.38e-01 90.0% 80.6%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.58 51.0 3.99e-01 100.0% 73.2%
2e8gA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 47.0 3.95e-01 88.6% 61.2%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 47.0 4.23e-01 92.9% 70.0%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 44.0 3.97e-01 87.1% 66.0%
1nrvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 47.0 4.19e-01 92.9% 70.0%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 47.0 3.80e-01 97.1% 73.1%
2rqxA00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 43.0 4.13e-01 95.7% 72.8%
2bhzA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 35.0 3.54e-01 80.0% 62.5%
1tm0A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.55 47.0 3.69e-01 100.0% 54.3%
6hjfA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.55 47.0 3.59e-01 100.0% 51.1%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 42.0 3.24e-01 90.0% 78.0%
2ablA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 45.0 4.08e-01 92.9% 72.2%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 45.0 3.82e-01 100.0% 58.2%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 47.0 4.17e-01 98.6% 75.0%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 44.0 3.57e-01 90.0% 79.3%
3us4A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 44.0 4.03e-01 92.9% 72.2%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 44.0 3.92e-01 92.9% 72.8%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 41.0 3.39e-01 88.6% 43.7%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.53 45.0 4.12e-01 94.3% 78.3%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 44.0 3.50e-01 98.6% 56.9%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.52 42.0 3.52e-01 94.3% 67.9%
3p0lD00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 42.0 3.26e-01 97.1% 56.2%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.52 45.0 3.68e-01 100.0% 82.4%
1e69A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 43.0 3.01e-01 98.6% 77.2%
2oviA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.51 41.0 3.20e-01 88.6% 84.2%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 42.0 3.77e-01 92.9% 73.0%
2e4mC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 41.0 3.32e-01 91.4% 60.1%
1k8kD01 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.50 44.0 3.42e-01 97.1% 51.7%
4mf9B01 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.50 45.0 3.41e-01 100.0% 73.9%
6ygnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 42.0 3.71e-01 95.7% 64.8%
4btfA03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 43.0 3.79e-01 100.0% 69.6%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1235359 331.1.1.8 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › AfAlkA-like_TBP-like 0.81 60.0 5.36e-01 91.4% 56.6%
3905709 243.3.1.22 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cyto_heme_lyase 0.74 55.0 4.00e-01 78.6% 43.9%
5044599 5.1.4.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.70 48.0 2.72e-01 70.0% 7.0%
2475231 519.1.1.1 a+b two layers › mRNA decapping enzyme DcpS N-terminal domain › mRNA decapping enzyme DcpS N-terminal domain › mRNA decapping enzyme DcpS N-terminal domain › DcpS 0.70 47.0 3.98e-01 70.0% 79.7%
3725227 519.1.1.1 a+b two layers › mRNA decapping enzyme DcpS N-terminal domain › mRNA decapping enzyme DcpS N-terminal domain › mRNA decapping enzyme DcpS N-terminal domain › DcpS 0.70 47.0 4.55e-01 70.0% 76.2%
5004346 331.19.1.0 a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains 0.70 53.0 4.97e-01 85.7% 67.1%
4950203 331.4.1.35 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › PF27341 0.69 58.0 3.96e-01 94.3% 26.8%
2722306 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.69 53.0 3.54e-01 84.3% 34.0%
5035423 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.69 42.0 4.00e-01 70.0% 50.6%
3436122 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.68 44.0 2.73e-01 70.0% 11.5%
4955671 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.66 44.0 4.30e-01 70.0% 68.8%
5004871 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.65 52.0 4.85e-01 90.0% 68.9%
3752441 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.65 56.0 4.69e-01 95.7% 68.3%
3683807 708.1.1.2 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › WRKY 0.65 47.0 4.27e-01 77.1% 58.9%
4988423 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.65 40.0 3.83e-01 70.0% 53.8%
3910253 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.64 54.0 4.80e-01 97.1% 77.1%
5047218 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.63 53.0 4.36e-01 95.7% 53.3%
3870867 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.63 51.0 4.36e-01 95.7% 54.2%
3517323 3131.1.1.2 a+b two layers › FYR domain › FYR domain › FYR domain › FYRN 0.62 52.0 4.55e-01 94.3% 93.6%
3516806 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.62 51.0 3.48e-01 95.7% 23.6%
None 0.62 52.0 4.95e-01 95.7% 85.9%
None 0.62 51.0 4.39e-01 95.7% 61.7%
3853974 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.61 53.0 4.77e-01 98.6% 89.0%
4964119 300.1.1.18 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FilR1_middle 0.61 42.0 3.22e-01 70.0% 63.7%
3859372 9.13.1.0 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.61 53.0 4.66e-01 97.1% 82.9%
3528458 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.61 52.0 4.60e-01 92.9% 70.0%
5075216 2.1.1.77 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_RpbG 0.60 48.0 4.09e-01 85.7% 98.2%
3167601 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.60 50.0 4.61e-01 97.1% 82.1%
4122018 4099.1.1.10 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.60 46.0 4.10e-01 82.9% 82.0%
4123284 5085.1.1.2 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › PF27489, PF29296 0.60 44.0 2.72e-01 80.0% 54.5%
3856809 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.60 47.0 4.39e-01 92.9% 67.8%
3953672 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.59 50.0 3.98e-01 98.6% 70.3%
1066273 331.3.1.12 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › STK_08120-like 0.59 51.0 4.20e-01 100.0% 73.3%
3258975 214.1.1.6 a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.59 45.0 4.03e-01 87.1% 58.0%
3228340 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.58 50.0 4.44e-01 100.0% 67.0%
4028683 3504.3.1.0 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain 0.58 51.0 3.81e-01 100.0% 76.1%
3992152 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.57 43.0 3.37e-01 100.0% 38.0%
4223430 2.1.1.16 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind 0.57 48.0 3.99e-01 91.4% 80.8%
3904660 4099.1.1.10 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.57 46.0 3.46e-01 97.1% 34.1%
4073317 2.1.1.16 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind 0.56 48.0 4.03e-01 91.4% 83.5%
3472650 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 47.0 3.84e-01 92.9% 58.5%
3213146 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 46.0 4.00e-01 92.9% 70.9%
4960484 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.56 44.0 3.55e-01 85.7% 57.8%
3509371 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 45.0 3.90e-01 92.9% 67.8%
3625355 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 43.0 2.85e-01 90.0% 21.6%
3787738 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.54 42.0 2.99e-01 87.1% 48.9%
4435338 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.54 42.0 2.73e-01 88.6% 23.1%
3786775 109.54.1.1 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.53 47.0 2.82e-01 100.0% 61.9%
3735796 206.1.1.48 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › FTA2 0.53 46.0 3.28e-01 100.0% 42.7%
3229399 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 47.0 3.01e-01 100.0% 83.6%
3855453 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.52 42.0 2.77e-01 90.0% 23.4%
4631877 5.1.4.219 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DPPIV_N 0.52 41.0 2.48e-01 90.0% 70.4%
1170463 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.52 43.0 3.93e-01 97.1% 70.3%
3558331 611.7.1.0 alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain 0.51 43.0 2.64e-01 95.7% 16.4%
1900833 2004.1.1.429 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.51 43.0 3.54e-01 97.1% 91.1%
4941516 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.51 41.0 3.17e-01 90.0% 61.8%
3798803 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 43.0 2.86e-01 97.1% 23.3%
3622454 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 45.0 2.76e-01 100.0% 82.0%
4397552 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.51 41.0 3.54e-01 100.0% 53.6%
4202468 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.50 41.0 2.73e-01 94.3% 22.9%