←Back to structures
LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00295
Bact-VirLacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00295
Identity
- Kingdom:
- phage
Quality
82.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 49-114
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hbpA00 | 2.30.30.700 | Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 | 0.70 | 54.0 | 5.46e-01 | 83.3% | 86.4% |
| 3stoA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.66 | 45.0 | 3.49e-01 | 71.2% | 91.8% |
| 3p34A02 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.63 | 53.0 | 4.72e-01 | 98.5% | 64.9% |
| 1pzdA01 | 2.60.40.1480 | Mainly Beta › Sandwich › Immunoglobulin-like › Coatomer, gamma subunit, appendage domain | 0.63 | 46.0 | 3.56e-01 | 80.3% | 84.0% |
| 4chmB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 49.0 | 4.02e-01 | 86.4% | 80.6% |
| 3mp6A05 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 44.0 | 4.49e-01 | 74.2% | 79.4% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 40.0 | 4.17e-01 | 75.8% | 70.5% |
| 3b5qA00 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.61 | 47.0 | 2.85e-01 | 95.5% | 12.1% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 43.0 | 4.38e-01 | 74.2% | 98.4% |
| 1ri9A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 44.0 | 4.24e-01 | 78.8% | 81.8% |
| 2ldmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 42.0 | 4.55e-01 | 80.3% | 92.5% |
| 2egcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 42.0 | 4.10e-01 | 75.8% | 82.7% |
| 2zkmX01 | 2.30.29.240 | Mainly Beta › Roll › PH-domain like › | 0.58 | 46.0 | 3.36e-01 | 90.9% | 53.9% |
| 4fvkA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.58 | 44.0 | 2.82e-01 | 86.4% | 48.5% |
| 3oymA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 42.0 | 4.19e-01 | 78.8% | 78.6% |
| 3sc7X01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.57 | 47.0 | 3.05e-01 | 95.5% | 38.4% |
| 3mx7A00 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.57 | 43.0 | 4.02e-01 | 86.4% | 100.0% |
| 2b3yA05 | 3.20.19.10 | Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 | 0.57 | 43.0 | 2.92e-01 | 78.8% | 92.3% |
| 1t0hA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 38.0 | 3.39e-01 | 71.2% | 78.1% |
| 2dk3A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 45.0 | 4.17e-01 | 93.9% | 81.4% |
| 8ornD01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.55 | 45.0 | 3.51e-01 | 100.0% | 88.1% |
| 4m0hA01 | 2.60.120.1440 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 39.0 | 3.13e-01 | 77.3% | 53.2% |
| 4u6bA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.54 | 46.0 | 2.97e-01 | 100.0% | 77.8% |
| 1vx7N01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 45.0 | 4.15e-01 | 97.0% | 71.8% |
| 1yqfB00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.53 | 46.0 | 3.37e-01 | 97.0% | 43.5% |
| 1xn5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 36.0 | 2.91e-01 | 71.2% | 68.8% |
| 5ncsA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.53 | 41.0 | 3.32e-01 | 100.0% | 41.7% |
| 5nslA02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.53 | 45.0 | 3.32e-01 | 100.0% | 68.9% |
| 2nvnA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.52 | 38.0 | 3.22e-01 | 80.3% | 100.0% |
| 2kd2A01 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 45.0 | 4.21e-01 | 100.0% | 97.6% |
| 3ligA02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.52 | 44.0 | 3.38e-01 | 100.0% | 83.4% |
| 5c0pA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.52 | 43.0 | 2.93e-01 | 98.5% | 91.5% |
| 1ssfA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 37.0 | 3.95e-01 | 87.9% | 92.7% |
| 1lf7A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 43.0 | 3.39e-01 | 100.0% | 60.4% |
| 3pveA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 45.0 | 3.34e-01 | 98.5% | 76.0% |
| 2bs6A01 | 2.40.128.190 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 39.0 | 3.67e-01 | 84.8% | 77.4% |
| 4o7iA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.51 | 35.0 | 2.60e-01 | 72.7% | 25.8% |
| 1w2tA02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.51 | 44.0 | 3.57e-01 | 100.0% | 77.6% |
| 3ndaA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.51 | 40.0 | 3.28e-01 | 100.0% | 44.7% |
| 4qt6A00 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.51 | 43.0 | 3.32e-01 | 98.5% | 74.8% |
| 1h30A01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 43.0 | 3.14e-01 | 100.0% | 67.3% |
| 2wjsA03 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 43.0 | 3.34e-01 | 100.0% | 73.3% |
ECOD (62)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3810217 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 48.0 | 5.39e-01 | 72.7% | 94.0% |
| 3508261 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.69 | 57.0 | 4.04e-01 | 95.5% | 60.9% |
| 3489562 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.66 | 45.0 | 2.80e-01 | 71.2% | 50.4% |
| 3326132 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 45.0 | 4.60e-01 | 74.2% | 72.3% |
| 3900097 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.65 | 53.0 | 4.19e-01 | 95.5% | 43.7% |
| 3912572 | 5.1.5.5 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N,DPPIV_rep | 0.64 | 45.0 | 2.68e-01 | 72.7% | 12.8% |
| 3304602 | 4.1.1.427 ↗ | beta barrels › SH3 › SH3 › SH3 › F-box | 0.64 | 47.0 | 4.12e-01 | 77.3% | 78.9% |
| 3920026 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.64 | 44.0 | 3.08e-01 | 74.2% | 22.9% |
| 5063311 | 4.1.1.364 ↗ | beta barrels › SH3 › SH3 › SH3 › GatD_N | 0.63 | 42.0 | 4.82e-01 | 71.2% | 100.0% |
| 3704327 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.63 | 50.0 | 4.96e-01 | 93.9% | 82.9% |
| 3621818 | 4.1.1.333 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29330 | 0.63 | 45.0 | 5.07e-01 | 80.3% | 100.0% |
| 4024913 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 46.0 | 4.71e-01 | 77.3% | 81.5% |
| 3242234 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.63 | 52.0 | 3.08e-01 | 93.9% | 11.7% |
| 3556601 | 4.1.1.304 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O | 0.62 | 46.0 | 4.72e-01 | 78.8% | 87.7% |
| 3879164 | 4.1.1.91 ↗ | beta barrels › SH3 › SH3 › SH3 › hSH3 | 0.62 | 43.0 | 4.13e-01 | 71.2% | 82.7% |
| 3779830 | 4.1.1.304 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O | 0.62 | 46.0 | 4.15e-01 | 78.8% | 63.3% |
| 4322675 | 220.1.1.121 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 | 0.62 | 48.0 | 4.11e-01 | 86.4% | 73.6% |
| 3513923 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 44.0 | 4.26e-01 | 75.8% | 80.0% |
| 3510676 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 43.0 | 3.84e-01 | 74.2% | 52.6% |
| 3993250 | 4.1.1.333 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29330 | 0.61 | 46.0 | 4.97e-01 | 80.3% | 96.4% |
| 5029405 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.61 | 47.0 | 5.01e-01 | 95.5% | 98.2% |
| 4940485 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.61 | 48.0 | 3.96e-01 | 87.9% | 93.6% |
| 4240494 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.61 | 42.0 | 2.63e-01 | 72.7% | 29.3% |
| 3719431 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 49.0 | 3.31e-01 | 92.4% | 75.9% |
| 3702915 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.60 | 42.0 | 4.41e-01 | 72.7% | 96.7% |
| 3502290 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 43.0 | 4.54e-01 | 77.3% | 86.7% |
| 5022448 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 44.0 | 4.24e-01 | 80.3% | 90.7% |
| 3372822 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 44.0 | 4.24e-01 | 78.8% | 80.0% |
| 2831843 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 46.0 | 3.98e-01 | 95.5% | 53.8% |
| 3841271 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.59 | 51.0 | 3.63e-01 | 100.0% | 32.1% |
| 3415045 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.58 | 43.0 | 4.25e-01 | 77.3% | 85.7% |
| 5018537 | 5090.1.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains | 0.58 | 46.0 | 4.07e-01 | 87.9% | 80.0% |
| 3573262 | 4.1.1.91 ↗ | beta barrels › SH3 › SH3 › SH3 › hSH3 | 0.58 | 44.0 | 4.00e-01 | 80.3% | 71.1% |
| 3907870 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.58 | 42.0 | 3.96e-01 | 75.8% | 77.2% |
| 4011973 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.58 | 46.0 | 2.95e-01 | 90.9% | 27.8% |
| 3929846 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.57 | 47.0 | 3.08e-01 | 92.4% | 79.5% |
| 4154880 | 5.1.2.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N | 0.57 | 47.0 | 3.03e-01 | 95.5% | 36.3% |
| 3373766 | 7.1.1.7 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 | 0.57 | 42.0 | 3.30e-01 | 80.3% | 97.3% |
| 3246255 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.57 | 49.0 | 4.83e-01 | 97.0% | 98.6% |
| 3413864 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.57 | 43.0 | 3.23e-01 | 81.8% | 38.8% |
| 3744119 | 868.1.1.3 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 | 0.56 | 48.0 | 3.53e-01 | 98.5% | 70.5% |
| 2503457 | 10.1.1.38 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH32_BT1760-like_C | 0.56 | 46.0 | 3.49e-01 | 92.4% | 97.1% |
| 4938030 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 48.0 | 3.02e-01 | 100.0% | 77.9% |
| 3536576 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.56 | 47.0 | 4.38e-01 | 95.5% | 72.9% |
| 3243143 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 42.0 | 4.26e-01 | 81.8% | 89.2% |
| 4134876 | 4.1.1.334 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 | 0.56 | 43.0 | 3.26e-01 | 84.8% | 40.0% |
| 3480491 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 48.0 | 4.60e-01 | 93.9% | 90.7% |
| 3220737 | 207.1.1.52 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 | 0.56 | 42.0 | 2.83e-01 | 83.3% | 45.9% |
| 3793656 | 4.1.1.169 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4819 | 0.56 | 44.0 | 3.57e-01 | 92.4% | 89.0% |
| 3224579 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.55 | 45.0 | 2.91e-01 | 89.4% | 24.5% |
| 3583675 | 5.1.4.321 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30361 | 0.55 | 45.0 | 2.93e-01 | 93.9% | 30.3% |
| 3722420 | 2008.1.1.143 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 | 0.54 | 40.0 | 3.10e-01 | 81.8% | 59.4% |
| 3212517 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.54 | 39.0 | 2.88e-01 | 78.8% | 75.3% |
| 4992060 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.53 | 45.0 | 3.43e-01 | 100.0% | 87.4% |
| 4939755 | 5.1.2.7 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_130 | 0.53 | 44.0 | 2.88e-01 | 100.0% | 80.3% |
| 3554293 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.53 | 42.0 | 4.31e-01 | 89.4% | 100.0% |
| 5792 | 295.1.1.6 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 | 0.53 | 38.0 | 3.21e-01 | 78.8% | 99.2% |
| 4000086 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.52 | 43.0 | 2.45e-01 | 95.5% | 20.8% |
| 3995675 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.52 | 38.0 | 3.93e-01 | 77.3% | 100.0% |
| 3912886 | 633.23.1.1 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin | 0.52 | 44.0 | 3.32e-01 | 100.0% | 74.3% |
| 3224967 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.51 | 39.0 | 2.75e-01 | 89.4% | 32.5% |
| 3952398 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.50 | 39.0 | 2.57e-01 | 86.4% | 39.9% |