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LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00296
Bact-VirLacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00296
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-155
Domain cluster:
rep: MG592647.1__AUS00778.1__NVP1278O_43__00043__D5-129
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bw2A01 | 3.10.20.420 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Bypass-of-forespore C, N-terminal domain | 0.62 | 24.0 | 3.78e-01 | 70.2% | 94.5% |
| 4q6lA00 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.53 | 37.0 | 3.93e-01 | 95.4% | 79.3% |
| 3bk2A03 | 3.10.20.580 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 30.0 | 3.55e-01 | 72.8% | 83.8% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3996695 | 3256.1.1.0 ↗ | a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain | 0.57 | 22.0 | 3.46e-01 | 74.2% | 94.5% |
| 5075730 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.55 | 33.0 | 3.75e-01 | 71.5% | 78.3% |
| 1147819 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.54 | 25.0 | 3.04e-01 | 96.0% | 64.6% |
| 3804004 | 221.1.1.237 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF4371 | 0.54 | 30.0 | 3.72e-01 | 92.7% | 88.9% |
| 4528690 | 7503.1.1.21 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › PF30731 | 0.54 | 38.0 | 4.34e-01 | 100.0% | 99.1% |
| 3439915 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.53 | 32.0 | 2.65e-01 | 99.3% | 30.5% |
| 3632065 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 39.0 | 3.13e-01 | 78.8% | 86.2% |