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LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00301
Bact-VirLacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00301
Identity
- Kingdom:
- phage
Quality
85.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-93
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21831.2 best | DUF6891 | 62.4 | 7.60e-17 | 100.0% | 53.2% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c7nA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.67 | 55.0 | 4.12e-01 | 91.9% | 77.3% |
| 3dzzA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.66 | 54.0 | 3.99e-01 | 91.9% | 71.3% |
| 3b1dA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.66 | 54.0 | 4.03e-01 | 91.9% | 77.3% |
| 5z0qA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.65 | 54.0 | 4.02e-01 | 91.9% | 78.4% |
| 1u08A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.62 | 51.0 | 3.76e-01 | 91.9% | 70.4% |
| 1gd9A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.60 | 49.0 | 3.70e-01 | 91.9% | 76.2% |
| 1yfsA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.60 | 52.0 | 3.88e-01 | 100.0% | 90.6% |
| 6qp2A01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.59 | 48.0 | 3.58e-01 | 91.9% | 72.2% |
| 8ffuA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.58 | 47.0 | 3.52e-01 | 91.9% | 70.9% |
| 7t85A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 47.0 | 3.91e-01 | 98.8% | 83.9% |
| 4j8lA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.55 | 45.0 | 3.34e-01 | 93.0% | 64.1% |
| 5o5qB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 45.0 | 3.83e-01 | 94.2% | 81.1% |
| 5ysnB02 | 3.40.50.11240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Ethanolamine ammonia-lyase light chain (EutC) | 0.52 | 45.0 | 3.58e-01 | 100.0% | 60.5% |
| 6lpwA02 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.51 | 40.0 | 3.15e-01 | 90.7% | 92.9% |
| 4g84A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 41.0 | 2.80e-01 | 89.5% | 27.6% |
| 2jw5A00 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.50 | 34.0 | 3.26e-01 | 70.9% | 86.8% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 224108 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.67 | 55.0 | 3.86e-01 | 91.9% | 60.2% |
| 5013976 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.66 | 54.0 | 4.81e-01 | 89.5% | 69.6% |
| 2417505 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.66 | 54.0 | 3.82e-01 | 91.9% | 61.7% |
| 5068460 | 7523.1.1.22 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › ABC2_membrane_3 | 0.64 | 52.0 | 4.42e-01 | 89.5% | 60.7% |
| 5064376 | 7523.1.1.22 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › ABC2_membrane_3 | 0.64 | 51.0 | 4.79e-01 | 89.5% | 79.1% |
| 4977216 | 7523.1.1.22 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › ABC2_membrane_3 | 0.63 | 50.0 | 4.75e-01 | 88.4% | 79.0% |
| 3947223 | 7523.1.1.22 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › ABC2_membrane_3 | 0.63 | 50.0 | 4.76e-01 | 88.4% | 81.0% |
| 4973801 | 7523.1.1.22 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › ABC2_membrane_3 | 0.62 | 51.0 | 4.40e-01 | 89.5% | 65.2% |
| 4940953 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.62 | 50.0 | 4.68e-01 | 89.5% | 79.1% |
| 5063708 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.62 | 50.0 | 4.57e-01 | 88.4% | 76.5% |
| 3263149 | 7523.1.1.22 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › ABC2_membrane_3 | 0.62 | 50.0 | 4.63e-01 | 89.5% | 85.2% |
| 3942953 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.62 | 50.0 | 4.79e-01 | 89.5% | 83.0% |
| 3838858 | 7523.1.1.22 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › ABC2_membrane_3 | 0.62 | 49.0 | 4.32e-01 | 89.5% | 61.5% |
| 4958720 | 7523.1.1.22 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › ABC2_membrane_3 | 0.62 | 50.0 | 4.50e-01 | 89.5% | 71.7% |
| 3977424 | 7523.1.1.22 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › ABC2_membrane_3 | 0.61 | 50.0 | 4.56e-01 | 89.5% | 76.5% |
| 3443777 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.60 | 49.0 | 3.13e-01 | 91.9% | 39.1% |
| 4956147 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.60 | 48.0 | 4.33e-01 | 90.7% | 65.6% |
| 4984876 | 7523.1.1.22 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › ABC2_membrane_3 | 0.59 | 48.0 | 4.51e-01 | 90.7% | 75.2% |
| 4984507 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.57 | 46.0 | 4.32e-01 | 90.7% | 73.6% |
| 3579197 | 7577.1.1.7 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Cys_Met_Meta_PP | 0.57 | 45.0 | 3.70e-01 | 88.4% | 92.4% |
| 4032825 | 7523.1.1.22 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › ABC2_membrane_3 | 0.57 | 45.0 | 3.99e-01 | 89.5% | 65.2% |
| 3929474 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.55 | 49.0 | 3.40e-01 | 100.0% | 90.8% |
| 3794616 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.54 | 47.0 | 3.26e-01 | 100.0% | 88.5% |
| 1518785 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.52 | 33.0 | 3.25e-01 | 86.0% | 57.4% |
| 4598421 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.52 | 38.0 | 3.42e-01 | 90.7% | 52.3% |
| 4370920 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.52 | 39.0 | 3.73e-01 | 93.0% | 70.0% |
| 3368345 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.52 | 44.0 | 3.30e-01 | 98.8% | 40.0% |
| 5039613 | 2004.1.1.1217 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF7125 | 0.51 | 41.0 | 3.28e-01 | 95.3% | 76.6% |
| 3998280 | 316.1.1.1 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol | 0.50 | 40.0 | 3.94e-01 | 100.0% | 81.1% |