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LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00318
Bact-VirLacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00318
Identity
- Kingdom:
- phage
Quality
94.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-76
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3iuwA00 | 2.30.130.30 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. | 0.71 | 56.0 | 5.39e-01 | 84.3% | 93.7% |
| 1v6zA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.67 | 51.0 | 5.30e-01 | 98.6% | 89.2% |
| 2b78A01 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.65 | 52.0 | 5.30e-01 | 88.6% | 95.5% |
| 6vbkA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.64 | 52.0 | 4.48e-01 | 90.0% | 80.2% |
| 3jtfA01 | 3.90.1280.20 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › | 0.63 | 39.0 | 4.13e-01 | 80.0% | 70.5% |
| 2og4A01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.62 | 53.0 | 3.76e-01 | 100.0% | 55.2% |
| 7cayA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.61 | 47.0 | 4.30e-01 | 88.6% | 78.0% |
| 2as0A01 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.60 | 47.0 | 4.71e-01 | 87.1% | 94.3% |
| 2kcqA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.59 | 51.0 | 4.05e-01 | 100.0% | 73.9% |
| 8a8gA01 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.59 | 48.0 | 3.94e-01 | 94.3% | 94.3% |
| 4dmgA01 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.57 | 46.0 | 4.59e-01 | 90.0% | 88.9% |
| 1bwzA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.57 | 48.0 | 4.00e-01 | 95.7% | 52.0% |
| 1d2oA02 | 2.60.40.1140 | Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain | 0.57 | 38.0 | 3.65e-01 | 74.3% | 60.0% |
| 3icaB00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.56 | 45.0 | 3.39e-01 | 94.3% | 92.7% |
| 4esjA01 | 3.40.210.30 | Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › Dam replacing family, catalytic PD-(D/E)XK domain | 0.56 | 48.0 | 3.81e-01 | 100.0% | 80.1% |
| 1oi0A00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.56 | 49.0 | 4.28e-01 | 100.0% | 73.1% |
| 5zveA02 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.56 | 45.0 | 4.28e-01 | 94.3% | 89.5% |
| 5cehA01 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.55 | 43.0 | 2.86e-01 | 87.1% | 96.6% |
| 3ocmB00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.55 | 45.0 | 3.62e-01 | 94.3% | 60.3% |
| 2d4zA00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.55 | 46.0 | 3.55e-01 | 97.1% | 60.4% |
| 1yloE02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.54 | 43.0 | 4.08e-01 | 100.0% | 73.8% |
| 2otnB01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.54 | 46.0 | 3.74e-01 | 100.0% | 49.3% |
| 4on1A01 | 2.40.128.470 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 44.0 | 3.53e-01 | 90.0% | 49.6% |
| 4ic1D00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.54 | 43.0 | 3.19e-01 | 92.9% | 49.5% |
| 4lg3A01 | 3.10.310.90 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.54 | 46.0 | 3.80e-01 | 100.0% | 77.6% |
| 6xwlE02 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.53 | 43.0 | 3.47e-01 | 90.0% | 54.0% |
| 8c5iA01 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.52 | 44.0 | 2.94e-01 | 98.6% | 37.5% |
| 3wuyA00 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.52 | 44.0 | 3.02e-01 | 100.0% | 35.5% |
| 3p8kA00 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.51 | 42.0 | 2.92e-01 | 95.7% | 69.8% |
| 1wchA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.50 | 41.0 | 2.76e-01 | 94.3% | 54.2% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3821558 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.68 | 58.0 | 3.67e-01 | 94.3% | 36.6% |
| 3263633 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.67 | 57.0 | 3.61e-01 | 94.3% | 40.6% |
| 3184260 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.67 | 56.0 | 3.51e-01 | 94.3% | 34.7% |
| 4014350 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.66 | 56.0 | 3.59e-01 | 94.3% | 39.1% |
| 4599661 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.66 | 56.0 | 3.42e-01 | 94.3% | 34.2% |
| 3617935 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.66 | 47.0 | 3.55e-01 | 81.4% | 30.5% |
| 2136498 | 1.1.9.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 | 0.66 | 53.0 | 5.27e-01 | 90.0% | 90.7% |
| 4590621 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.66 | 55.0 | 3.52e-01 | 94.3% | 36.4% |
| 4098518 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.65 | 54.0 | 3.41e-01 | 94.3% | 36.1% |
| 4211146 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.64 | 54.0 | 3.38e-01 | 94.3% | 34.9% |
| 3580762 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 53.0 | 3.65e-01 | 94.3% | 40.7% |
| 3415033 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.64 | 54.0 | 3.46e-01 | 95.7% | 36.7% |
| 4651701 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.64 | 51.0 | 4.93e-01 | 88.6% | 93.7% |
| 3499164 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.63 | 54.0 | 3.52e-01 | 95.7% | 34.5% |
| 3974259 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.63 | 53.0 | 4.22e-01 | 92.9% | 66.4% |
| 3620960 | 2008.1.1.147 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF29557 | 0.62 | 52.0 | 3.33e-01 | 95.7% | 39.2% |
| 2045147 | 269.1.1.3 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › COLFI | 0.62 | 44.0 | 3.10e-01 | 100.0% | 22.4% |
| 3369575 | 2492.1.1.36 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like | 0.61 | 53.0 | 3.95e-01 | 100.0% | 80.0% |
| 3377114 | 328.4.1.1 ↗ | a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY | 0.60 | 45.0 | 4.09e-01 | 80.0% | 72.6% |
| 3225190 | 2492.1.1.36 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like | 0.60 | 51.0 | 3.92e-01 | 100.0% | 76.6% |
| 3821093 | 328.4.1.1 ↗ | a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY | 0.60 | 44.0 | 4.03e-01 | 80.0% | 72.6% |
| 4266767 | 1.1.9.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 | 0.60 | 47.0 | 4.78e-01 | 100.0% | 90.0% |
| 4402945 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.58 | 50.0 | 4.05e-01 | 100.0% | 73.6% |
| 1273564 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.58 | 50.0 | 3.93e-01 | 100.0% | 64.7% |
| 2431072 | 1.1.9.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA | 0.58 | 46.0 | 4.21e-01 | 92.9% | 78.0% |
| 1503110 | 2008.1.1.21 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnI | 0.57 | 49.0 | 3.78e-01 | 100.0% | 73.3% |
| 4386244 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.57 | 47.0 | 4.11e-01 | 100.0% | 60.0% |
| 5076005 | 328.4.1.0 ↗ | a+b two layers › IF3-like › YhbY-like › YhbY-like | 0.57 | 43.0 | 4.04e-01 | 82.9% | 84.1% |
| 5038145 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.57 | 50.0 | 4.16e-01 | 100.0% | 74.2% |
| 5029699 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.57 | 49.0 | 4.11e-01 | 100.0% | 77.4% |
| 3831482 | 328.4.1.1 ↗ | a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY | 0.56 | 42.0 | 3.62e-01 | 81.4% | 66.4% |
| 3815770 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.56 | 47.0 | 3.63e-01 | 95.7% | 63.0% |
| 5063510 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.56 | 48.0 | 4.11e-01 | 100.0% | 77.5% |
| 4952815 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.56 | 49.0 | 4.00e-01 | 100.0% | 70.4% |
| 5045500 | 328.4.1.1 ↗ | a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY | 0.55 | 42.0 | 3.91e-01 | 82.9% | 83.1% |
| 3579857 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.55 | 46.0 | 3.23e-01 | 98.6% | 77.7% |
| 4237614 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.55 | 45.0 | 3.37e-01 | 91.4% | 94.4% |
| 4981147 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.54 | 46.0 | 3.63e-01 | 100.0% | 61.2% |
| 5063705 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.54 | 45.0 | 3.57e-01 | 100.0% | 61.8% |
| 3216932 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 44.0 | 2.95e-01 | 97.1% | 67.9% |
| 4970914 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.52 | 45.0 | 3.07e-01 | 98.6% | 39.2% |
| 363983 | 234.1.1.1 ↗ | a+b two layers › Microbial ribonucleases-like › Microbial ribonucleases › Microbial ribonucleases › Ribonuclease | 0.52 | 36.0 | 3.32e-01 | 72.9% | 75.8% |
| 2850205 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.52 | 42.0 | 3.63e-01 | 92.9% | 62.5% |
| 2775613 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.52 | 44.0 | 2.77e-01 | 97.1% | 73.3% |
| 3934183 | 214.1.1.9 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7063 | 0.52 | 37.0 | 3.30e-01 | 94.3% | 51.4% |
| 4522471 | 2486.1.1.1 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_1 | 0.52 | 45.0 | 2.98e-01 | 100.0% | 48.7% |
| 145016 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.51 | 42.0 | 2.98e-01 | 97.1% | 73.8% |
| 4016430 | 7502.1.1.2 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix | 0.51 | 44.0 | 3.10e-01 | 100.0% | 35.4% |
| 4946427 | 2004.1.1.308 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 | 0.50 | 42.0 | 2.82e-01 | 100.0% | 28.8% |
| 3502927 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.50 | 43.0 | 3.09e-01 | 100.0% | 46.7% |
| 4302290 | 4002.1.1.4 ↗ | alpha bundles › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › DHQS_C | 0.50 | 43.0 | 3.23e-01 | 100.0% | 62.6% |