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LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00338
Bact-VirLacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00338
Identity
- Kingdom:
- phage
Quality
65.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-81
D2
high
residues 286-367
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4r3dA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 36.0 | 3.00e-01 | 91.5% | 31.4% |
| 4fwwA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.64 | 47.0 | 2.99e-01 | 80.5% | 77.5% |
| 1eh7A01 | 3.30.160.70 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain | 0.63 | 34.0 | 3.68e-01 | 100.0% | 61.4% |
| 1dklB01 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.61 | 42.0 | 2.90e-01 | 72.0% | 98.9% |
| 1xteA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.59 | 40.0 | 3.63e-01 | 70.7% | 88.8% |
| 1m1hA02 | 2.60.320.10 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain | 0.58 | 41.0 | 4.19e-01 | 100.0% | 74.4% |
| 3au4A04 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 49.0 | 4.70e-01 | 100.0% | 87.1% |
| 2z0qA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 48.0 | 4.22e-01 | 100.0% | 88.3% |
| 3pvlA04 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 48.0 | 4.57e-01 | 98.8% | 93.9% |
| 5d3xB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 48.0 | 4.07e-01 | 100.0% | 70.2% |
| 2bklA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.55 | 41.0 | 2.78e-01 | 81.7% | 89.3% |
| 1wjmA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 48.0 | 4.24e-01 | 100.0% | 91.1% |
| 3qijB03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 49.0 | 4.78e-01 | 100.0% | 92.1% |
| 3fssA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 47.0 | 4.68e-01 | 100.0% | 97.7% |
| 1fhoA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 47.0 | 4.22e-01 | 100.0% | 87.4% |
| 2xqyA01 | 3.30.500.50 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.54 | 47.0 | 3.74e-01 | 100.0% | 56.2% |
| 1h4rA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 47.0 | 4.60e-01 | 100.0% | 93.4% |
| 3o4hA01 | 2.130.10.150 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain | 0.52 | 41.0 | 2.89e-01 | 89.0% | 88.7% |
| 1p9rA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 42.0 | 3.86e-01 | 90.2% | 76.6% |
| 3us4A00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.52 | 37.0 | 3.50e-01 | 87.8% | 62.9% |
ECOD (57)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4614679 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 41.0 | 4.89e-01 | 87.8% | 100.0% |
| 4971601 | 241.14.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C | 0.66 | 42.0 | 4.52e-01 | 78.0% | 75.7% |
| 1489671 | 375.1.1.47 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC | 0.66 | 41.0 | 4.65e-01 | 89.0% | 91.1% |
| 3669824 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.66 | 36.0 | 4.28e-01 | 79.3% | 80.0% |
| 3688360 | 386.1.1.345 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF28347 | 0.65 | 35.0 | 4.40e-01 | 76.8% | 93.3% |
| 4120366 | 375.1.1.47 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC | 0.64 | 40.0 | 4.56e-01 | 89.0% | 92.7% |
| 4203469 | 375.1.1.47 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC | 0.62 | 38.0 | 4.39e-01 | 89.0% | 92.7% |
| 4031797 | 375.1.1.47 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC | 0.61 | 40.0 | 4.54e-01 | 91.5% | 98.2% |
| 4389625 | 375.1.1.47 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC | 0.61 | 38.0 | 4.36e-01 | 89.0% | 94.5% |
| 3833641 | 192.8.1.342 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › PHM7_cyt | 0.60 | 42.0 | 4.48e-01 | 76.8% | 84.3% |
| 3820897 | 109.4.1.1682 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PHM7_cyt | 0.60 | 41.0 | 4.41e-01 | 75.6% | 82.9% |
| 4239498 | 375.1.1.47 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC | 0.60 | 39.0 | 4.47e-01 | 92.7% | 100.0% |
| 3350649 | 192.8.1.342 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › PHM7_cyt | 0.58 | 41.0 | 3.89e-01 | 76.8% | 62.1% |
| 3427234 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.58 | 39.0 | 2.80e-01 | 95.1% | 23.3% |
| 3937784 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.57 | 50.0 | 4.35e-01 | 98.8% | 70.8% |
| 3388412 | 2485.1.1.31 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Redoxin | 0.57 | 50.0 | 4.11e-01 | 100.0% | 67.7% |
| 3887129 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 49.0 | 4.79e-01 | 100.0% | 95.6% |
| 3500471 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.56 | 49.0 | 4.26e-01 | 100.0% | 70.0% |
| 3924720 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.56 | 38.0 | 3.77e-01 | 73.2% | 67.1% |
| 4001788 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.56 | 49.0 | 4.16e-01 | 100.0% | 72.9% |
| 3475699 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.56 | 48.0 | 4.49e-01 | 100.0% | 84.8% |
| 3903537 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.56 | 48.0 | 4.38e-01 | 100.0% | 85.2% |
| 3489732 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 49.0 | 4.49e-01 | 100.0% | 91.8% |
| 3493400 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.56 | 48.0 | 4.50e-01 | 100.0% | 86.7% |
| None | — | 0.55 | 48.0 | 4.20e-01 | 100.0% | 69.2% | |
| 3907329 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.55 | 48.0 | 4.18e-01 | 100.0% | 69.2% |
| 3701480 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 49.0 | 4.30e-01 | 100.0% | 65.6% |
| 4110879 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.55 | 49.0 | 4.18e-01 | 100.0% | 63.0% |
| 3496370 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 48.0 | 4.17e-01 | 100.0% | 69.2% |
| 3562988 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.55 | 49.0 | 4.16e-01 | 100.0% | 71.9% |
| 3705856 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.55 | 46.0 | 3.11e-01 | 90.2% | 48.7% |
| 3486831 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.55 | 48.0 | 3.49e-01 | 100.0% | 34.7% |
| 3630369 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.55 | 48.0 | 4.11e-01 | 100.0% | 66.7% |
| 3909375 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.55 | 47.0 | 4.09e-01 | 100.0% | 66.7% |
| 3565424 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.55 | 48.0 | 4.22e-01 | 100.0% | 77.6% |
| 3501913 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 48.0 | 4.07e-01 | 100.0% | 60.7% |
| 4076629 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.55 | 48.0 | 3.35e-01 | 100.0% | 30.9% |
| 3404845 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.54 | 47.0 | 4.54e-01 | 100.0% | 90.5% |
| 4013297 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.54 | 48.0 | 3.71e-01 | 100.0% | 90.8% |
| 3532957 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.54 | 47.0 | 4.02e-01 | 100.0% | 61.4% |
| 3487656 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 47.0 | 4.57e-01 | 100.0% | 90.5% |
| None | — | 0.54 | 48.0 | 4.13e-01 | 100.0% | 66.2% | |
| 3843072 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.54 | 47.0 | 3.32e-01 | 100.0% | 31.6% |
| None | — | 0.54 | 47.0 | 4.39e-01 | 100.0% | 81.0% | |
| 5053366 | 2003.1.5.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth | 0.54 | 46.0 | 3.13e-01 | 97.6% | 31.1% |
| 3837943 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.54 | 47.0 | 3.95e-01 | 100.0% | 73.8% |
| 3412282 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.53 | 47.0 | 4.19e-01 | 100.0% | 73.3% |
| 4004179 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.53 | 47.0 | 3.44e-01 | 100.0% | 36.1% |
| 3497738 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.53 | 46.0 | 4.03e-01 | 100.0% | 63.8% |
| 3899189 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.53 | 36.0 | 3.58e-01 | 72.0% | 65.6% |
| 4154219 | 589.1.1.2 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › SurA_N_3 | 0.53 | 37.0 | 2.93e-01 | 73.2% | 100.0% |
| 3249490 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.52 | 45.0 | 4.09e-01 | 100.0% | 81.7% |
| 3961571 | 3699.1.1.3 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synth | 0.52 | 44.0 | 3.95e-01 | 97.6% | 81.7% |
| 4030617 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.51 | 38.0 | 4.10e-01 | 95.1% | 92.9% |
| 5055937 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.51 | 35.0 | 2.53e-01 | 72.0% | 38.6% |
| 5013176 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.51 | 40.0 | 4.19e-01 | 92.7% | 93.3% |
| 1680145 | 219.1.1.43 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CoV_peptidase | 0.51 | 36.0 | 2.57e-01 | 84.1% | 23.6% |
D3
medium
residues 89-159
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qr0A01 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.55 | 43.0 | 3.71e-01 | 88.7% | 97.6% |
| 2i00A03 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.53 | 38.0 | 3.59e-01 | 100.0% | 60.0% |
| 1qmiA02 | 3.30.360.20 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain | 0.51 | 39.0 | 3.62e-01 | 84.5% | 75.8% |
| 1gsoA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 39.0 | 3.32e-01 | 90.1% | 95.7% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4933066 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.56 | 35.0 | 4.03e-01 | 80.3% | 97.8% |
| 4606402 | 243.1.1.76 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF25976 | 0.52 | 40.0 | 3.46e-01 | 87.3% | 95.0% |
| 3312580 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.51 | 37.0 | 2.57e-01 | 80.3% | 92.5% |
| 3164210 | 7523.1.1.10 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › HisG | 0.50 | 39.0 | 2.93e-01 | 93.0% | 96.0% |