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LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00356
Bact-VirLacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00356
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 34-146
Domain cluster:
rep: ALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00099__D4-161
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ebfX01 | 3.10.670.10 | Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. | 0.61 | 48.0 | 4.06e-01 | 85.0% | 58.5% |
| 2n99A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.57 | 30.0 | 3.47e-01 | 71.7% | 71.1% |
| 2f5tX02 | 2.30.30.690 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 27.0 | 3.00e-01 | 86.7% | 55.6% |
| 1cv8A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.54 | 41.0 | 3.60e-01 | 80.5% | 91.9% |
| 5ib9A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.50 | 35.0 | 2.74e-01 | 74.3% | 49.5% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7380 | 219.1.1.34 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C47 | 0.54 | 41.0 | 3.60e-01 | 80.5% | 91.9% |
| 4097184 | 76.1.1.4 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_mid | 0.54 | 44.0 | 3.65e-01 | 91.2% | 78.1% |
| 5078649 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.53 | 43.0 | 3.62e-01 | 88.5% | 75.5% |
| 4939745 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.52 | 42.0 | 3.42e-01 | 89.4% | 77.3% |
| 4988761 | 4.15.1.2 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 | 0.52 | 31.0 | 3.49e-01 | 84.1% | 76.7% |
| 3240882 | 2492.1.1.11 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 | 0.51 | 40.0 | 3.12e-01 | 82.3% | 90.6% |
| 3635387 | 2492.1.1.11 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 | 0.51 | 40.0 | 3.22e-01 | 83.2% | 93.9% |
| 3717221 | 2492.1.1.6 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › A_deamin | 0.51 | 43.0 | 3.07e-01 | 95.6% | 74.0% |
| 3836507 | 76.1.1.2 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin | 0.51 | 40.0 | 3.55e-01 | 84.1% | 72.7% |
| 3394223 | 11.1.1.229 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IRK_C | 0.50 | 36.0 | 3.15e-01 | 74.3% | 53.5% |
| 3795553 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.50 | 29.0 | 3.14e-01 | 78.8% | 65.6% |
| 4241754 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.50 | 39.0 | 3.36e-01 | 82.3% | 62.3% |