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LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00004

Bact-Vir

LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00004

Identity

Kingdom:
phage

Quality

91.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-48
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6qigA01 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.68 47.0 3.08e-01 93.8% 17.8%
3sxpA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.66 42.0 2.77e-01 87.5% 14.9%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.64 48.0 3.51e-01 81.2% 89.5%
6g9sA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 44.0 2.69e-01 87.5% 59.5%
3sdbA03 1.10.10.1140 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Glutamine-dependent NAD+ synthetase, C-terminal domain 0.56 44.0 3.31e-01 87.5% 82.9%
2pw4A00 1.10.3300.10 Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain 0.54 44.0 2.99e-01 91.7% 57.9%
3b08E00 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.50 39.0 3.73e-01 87.5% 96.6%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4954542 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.85 59.0 6.79e-01 75.0% 100.0%
3622162 192.2.1.34 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › CpG_bind_C 0.82 71.0 4.57e-01 95.8% 22.5%
3562264 219.1.1.112 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.78 62.0 3.59e-01 85.4% 79.0%
4314985 377.1.1.15 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YacG 0.73 58.0 6.08e-01 85.4% 95.3%
3700937 377.9.1.2 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT 0.69 48.0 5.15e-01 72.9% 90.0%
3489858 377.9.1.9 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › MYND_ZMYND11_ZMYD8 0.69 50.0 4.96e-01 79.2% 74.0%
3800970 377.9.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like 0.69 49.0 5.30e-01 79.2% 90.0%
3405764 377.9.1.9 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › MYND_ZMYND11_ZMYD8 0.68 48.0 5.21e-01 79.2% 90.0%
3433813 7550.1.1.1 ↗ a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase 0.62 37.0 2.95e-01 72.9% 32.2%
3935895 377.9.1.2 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT 0.62 45.0 4.83e-01 79.2% 95.0%
1295901 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.58 51.0 3.61e-01 93.8% 97.0%
4336252 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.56 39.0 3.11e-01 75.0% 41.9%
3443163 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.55 46.0 3.62e-01 97.9% 88.6%