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LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00006
Bact-VirLacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00006
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 43-96
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1td6A03 | 1.10.472.40 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3 | 0.71 | 50.0 | 4.21e-01 | 74.1% | 50.0% |
| 2i53A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.69 | 58.0 | 4.70e-01 | 100.0% | 47.7% |
| 2j82A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.67 | 56.0 | 3.82e-01 | 100.0% | 53.8% |
| 1j8yF01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.66 | 54.0 | 4.68e-01 | 92.6% | 97.7% |
| 1asuA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.65 | 50.0 | 3.58e-01 | 85.2% | 85.2% |
| 3b8bA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.64 | 53.0 | 3.95e-01 | 98.1% | 45.3% |
| 1aisB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.64 | 53.0 | 4.47e-01 | 100.0% | 54.3% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.63 | 55.0 | 4.55e-01 | 100.0% | 56.7% |
| 2paqA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.62 | 54.0 | 3.81e-01 | 100.0% | 50.3% |
| 1f7uA02 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.62 | 44.0 | 3.37e-01 | 75.9% | 84.8% |
| 2p5tA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.62 | 49.0 | 4.16e-01 | 88.9% | 72.8% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 51.0 | 5.17e-01 | 94.4% | 98.1% |
| 2i10B02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 50.0 | 3.90e-01 | 94.4% | 48.8% |
| 4i8oA03 | 1.10.8.1130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain | 0.59 | 51.0 | 4.81e-01 | 100.0% | 85.1% |
| 3if8B02 | 1.20.58.730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 48.0 | 3.95e-01 | 90.7% | 58.0% |
| 2ja2A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.58 | 36.0 | 3.71e-01 | 85.2% | 65.4% |
| 3tmpA01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.58 | 47.0 | 3.61e-01 | 100.0% | 68.7% |
| 4bopB00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.58 | 48.0 | 3.60e-01 | 100.0% | 69.3% |
| 3bh0A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 45.0 | 2.86e-01 | 87.0% | 56.0% |
| 1x0tA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.56 | 39.0 | 3.82e-01 | 79.6% | 67.2% |
| 3dcfA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 45.0 | 3.44e-01 | 94.4% | 39.4% |
| 3er9B01 | 1.20.1270.320 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Poxvirus poly(A) polymerase, N domain | 0.54 | 40.0 | 3.31e-01 | 85.2% | 62.3% |
| 5k7fA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 43.0 | 3.31e-01 | 96.3% | 78.3% |
| 2bdeA03 | 1.20.58.1160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 43.0 | 3.89e-01 | 96.3% | 85.7% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3649730 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.75 | 66.0 | 5.56e-01 | 100.0% | 62.2% |
| 4095141 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.74 | 60.0 | 4.66e-01 | 90.7% | 40.8% |
| 3304227 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.73 | 59.0 | 5.24e-01 | 90.7% | 61.3% |
| 3470215 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.73 | 56.0 | 5.73e-01 | 85.2% | 94.0% |
| 5056832 | 3457.1.1.1 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 | 0.72 | 59.0 | 4.25e-01 | 92.6% | 37.5% |
| 3503474 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.72 | 59.0 | 3.89e-01 | 100.0% | 21.4% |
| 3581840 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.71 | 61.0 | 5.14e-01 | 100.0% | 60.0% |
| 4929479 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.69 | 56.0 | 4.78e-01 | 90.7% | 55.6% |
| 3535287 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.69 | 55.0 | 4.98e-01 | 88.9% | 69.3% |
| 4945282 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.68 | 54.0 | 4.29e-01 | 88.9% | 77.2% |
| 4991390 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.68 | 55.0 | 4.58e-01 | 94.4% | 50.5% |
| 3423711 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.68 | 60.0 | 4.76e-01 | 100.0% | 50.0% |
| 5042605 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.68 | 54.0 | 4.60e-01 | 90.7% | 53.8% |
| 5042406 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.68 | 58.0 | 4.90e-01 | 100.0% | 61.1% |
| 3261624 | 3470.1.1.0 ↗ | extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain | 0.67 | 49.0 | 5.06e-01 | 88.9% | 88.0% |
| 4947168 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.66 | 55.0 | 4.69e-01 | 100.0% | 56.7% |
| 3623358 | 101.1.10.14 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C_2 | 0.65 | 55.0 | 4.85e-01 | 100.0% | 65.9% |
| 4961655 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.65 | 53.0 | 4.50e-01 | 100.0% | 53.7% |
| 5025139 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.65 | 54.0 | 4.51e-01 | 100.0% | 53.7% |
| 4944102 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.64 | 53.0 | 4.54e-01 | 100.0% | 56.7% |
| 4947863 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.64 | 52.0 | 4.52e-01 | 100.0% | 56.7% |
| 4032764 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.64 | 49.0 | 3.96e-01 | 88.9% | 41.7% |
| 3814488 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.63 | 55.0 | 4.41e-01 | 100.0% | 54.5% |
| 3735463 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.61 | 48.0 | 4.14e-01 | 88.9% | 92.2% |
| 4145808 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.60 | 45.0 | 4.29e-01 | 83.3% | 69.2% |
| 5040119 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.60 | 43.0 | 4.26e-01 | 79.6% | 83.3% |
| 5071678 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 47.0 | 3.61e-01 | 92.6% | 39.2% |
| 5038830 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.57 | 41.0 | 3.41e-01 | 79.6% | 42.0% |
| 3184927 | 568.1.1.0 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related | 0.55 | 39.0 | 4.16e-01 | 75.9% | 100.0% |
| 4539195 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.54 | 42.0 | 3.48e-01 | 92.6% | 44.8% |
| 3256686 | 568.1.1.0 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related | 0.53 | 44.0 | 4.45e-01 | 98.1% | 92.7% |
| 4928813 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.51 | 43.0 | 3.88e-01 | 94.4% | 69.3% |