←Back to structures
LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00013
Bact-VirLacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00013
Identity
- Kingdom:
- phage
Quality
84.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-55
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1miuA04 | 6.10.70.10 | Special › Helix non-globular › Topoisomerase I; Chain A, domain 4 › | 0.83 | 75.0 | 5.65e-01 | 100.0% | 48.4% |
| 3anwA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.80 | 61.0 | 4.67e-01 | 81.1% | 40.7% |
| 2r9iA00 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.79 | 60.0 | 5.44e-01 | 81.1% | 60.6% |
| 6tkyA03 | 1.20.58.740 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C | 0.78 | 66.0 | 5.09e-01 | 96.2% | 76.2% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.78 | 58.0 | 5.70e-01 | 81.1% | 75.9% |
| 4ljyA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.77 | 60.0 | 4.00e-01 | 83.0% | 95.3% |
| 1wcrA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.75 | 66.0 | 5.35e-01 | 100.0% | 95.1% |
| 2a3qA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.74 | 60.0 | 4.52e-01 | 86.8% | 39.8% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.72 | 52.0 | 5.06e-01 | 81.1% | 69.5% |
| 1s5jA04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.72 | 54.0 | 5.18e-01 | 79.2% | 72.1% |
| 1s4eG02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.71 | 58.0 | 4.21e-01 | 94.3% | 32.0% |
| 1vcsA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.69 | 53.0 | 4.26e-01 | 83.0% | 46.1% |
| 4y5jA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.68 | 50.0 | 3.34e-01 | 81.1% | 29.1% |
| 1owlA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.68 | 54.0 | 4.19e-01 | 90.6% | 64.2% |
| 3qxlA00 | 1.10.840.10 | Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain | 0.67 | 57.0 | 3.76e-01 | 100.0% | 40.4% |
| 1w36B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 56.0 | 3.55e-01 | 90.6% | 33.9% |
| 3wozB00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.66 | 51.0 | 3.42e-01 | 86.8% | 25.8% |
| 1uouA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.66 | 47.0 | 4.35e-01 | 75.5% | 86.8% |
| 1kf6C00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.64 | 50.0 | 3.71e-01 | 83.0% | 53.1% |
| 2kmuA00 | 1.10.10.1460 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.64 | 45.0 | 4.44e-01 | 75.5% | 80.4% |
| 4jccA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.63 | 52.0 | 3.60e-01 | 92.5% | 72.8% |
| 7wj9A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.63 | 51.0 | 3.29e-01 | 100.0% | 21.8% |
| 3egeA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 42.0 | 2.72e-01 | 71.7% | 38.5% |
| 6zd1A01 | 1.10.132.70 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.59 | 45.0 | 3.37e-01 | 90.6% | 93.6% |
| 2vkhA03 | 1.10.10.1780 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.58 | 45.0 | 4.14e-01 | 84.9% | 76.8% |
| 8hk0A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.57 | 45.0 | 3.56e-01 | 90.6% | 73.9% |
| 6k4yI00 | 1.10.1810.10 | Mainly Alpha › Orthogonal Bundle › Anti-sigma factor AsiA › Anti-Sigma Factor A | 0.57 | 42.0 | 3.63e-01 | 81.1% | 87.5% |
| 3do6A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 44.0 | 2.77e-01 | 94.3% | 80.6% |
| 1nv8B01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.51 | 37.0 | 3.41e-01 | 79.2% | 88.7% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3496361 | 3469.1.1.0 ↗ | extended segments › Ubiquitin-binding motif (UBM) › Ubiquitin-binding motif (UBM) › Ubiquitin-binding motif (UBM) | 0.85 | 70.0 | 7.23e-01 | 88.7% | 100.0% |
| 4070346 | 192.8.1.343 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Val_tRNA-synt_C | 0.85 | 65.0 | 6.02e-01 | 81.1% | 73.8% |
| 4147837 | 192.1.1.41 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › Val_tRNA-synt_C | 0.85 | 65.0 | 6.03e-01 | 81.1% | 73.8% |
| 3405161 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.82 | 74.0 | 5.34e-01 | 98.1% | 42.0% |
| 4603635 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.82 | 72.0 | 4.13e-01 | 96.2% | 23.3% |
| 3296414 | 192.29.1.168 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF641 | 0.80 | 61.0 | 5.53e-01 | 81.1% | 61.4% |
| 4951588 | 4163.1.2.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like | 0.80 | 67.0 | 4.99e-01 | 92.5% | 86.9% |
| 3254719 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.79 | 68.0 | 5.62e-01 | 96.2% | 98.9% |
| 3634891 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.78 | 70.0 | 4.23e-01 | 100.0% | 36.1% |
| 3310956 | 630.1.1.0 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain | 0.77 | 65.0 | 4.59e-01 | 90.6% | 94.0% |
| 3456216 | 4163.1.2.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like › Sld5 | 0.77 | 69.0 | 5.33e-01 | 98.1% | 82.7% |
| 3173138 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.76 | 49.0 | 4.05e-01 | 86.8% | 38.9% |
| 5066129 | 7552.1.1.1 ↗ | a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase | 0.72 | 54.0 | 3.13e-01 | 81.1% | 14.5% |
| 3606458 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.71 | 50.0 | 4.67e-01 | 73.6% | 69.2% |
| 3623284 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.71 | 62.0 | 4.20e-01 | 98.1% | 90.5% |
| 3488562 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 60.0 | 4.90e-01 | 96.2% | 62.0% |
| 4373664 | 574.1.1.0 ↗ | alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain) | 0.68 | 57.0 | 4.56e-01 | 90.6% | 62.0% |
| 4167109 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.65 | 59.0 | 3.33e-01 | 100.0% | 39.0% |
| 3963900 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.65 | 45.0 | 3.89e-01 | 73.6% | 48.2% |
| 5026055 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.62 | 57.0 | 3.49e-01 | 100.0% | 52.2% |
| 3783615 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.61 | 51.0 | 3.13e-01 | 92.5% | 83.7% |