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LacPavin_0818_WC40_scaffold_193576_prodigal-single.1XX__00032

Bact-Vir

LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00032

Identity

Kingdom:: phage

Quality

83.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 129-176

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3bvoA02	1.20.1280.20	Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain	0.76	56.0	4.60e-01	100.0%	44.2%
1sr2A00	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.68	48.0	3.76e-01	95.8%	32.8%
6t0bc01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.62	50.0	4.36e-01	100.0%	57.7%
3u7iA00	3.40.50.360	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain	0.62	54.0	3.51e-01	100.0%	33.0%
4v19700	1.10.287.3980	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.62	34.0	3.50e-01	97.9%	56.5%
3pf6A00	6.10.250.2290	Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.57	49.0	4.62e-01	100.0%	80.0%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3335055	109.4.1.883 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2	0.72	54.0	3.34e-01	95.8%	13.7%
3596613	2486.1.1.0 ↗	a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase	0.71	49.0	2.82e-01	72.9%	10.6%
4184811	3455.1.1.0 ↗	alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors	0.68	51.0	4.14e-01	79.2%	50.6%
5020018	298.2.1.1 ↗	a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE	0.67	54.0	3.92e-01	89.6%	48.9%
3842944	109.3.1.2 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2	0.63	50.0	3.35e-01	93.8%	38.2%
3880560	109.27.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain	0.60	54.0	4.22e-01	100.0%	93.0%
3893465	103.1.1.0 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain	0.59	44.0	3.93e-01	81.2%	71.4%
5001814	3407.1.1.0 ↗	mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain	0.56	51.0	4.14e-01	100.0%	56.5%
3959662	7581.1.1.0 ↗	a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like	0.54	43.0	2.85e-01	91.7%	46.2%
3246204	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.54	41.0	4.44e-01	91.7%	100.0%
3207021	7581.1.1.1 ↗	a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N	0.51	38.0	2.46e-01	85.4%	88.5%

D2 medium residues 17-109

PDB

Domain cluster: rep: IMGVR_UViG_3300028635_000513-3300028635-Ga0302245_10079566__D9-95

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2o0jA02	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.82	69.0	4.84e-01	96.8%	32.3%
2fxaA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.50	37.0	3.16e-01	78.5%	75.0%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
317607	2004.1.1.99 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_6N	0.82	69.0	4.45e-01	96.8%	22.8%
5005295	101.1.2.101 ↗	alpha arrays › HTH › HTH › winged helix domain › Cdc6_C	0.53	40.0	3.66e-01	82.8%	94.6%