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LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00078
Bact-VirLacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00078
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-76
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fbnA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.67 | 48.0 | 3.48e-01 | 77.4% | 28.1% |
| 3kezA03 | 1.25.40.900 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.66 | 54.0 | 4.32e-01 | 96.2% | 47.9% |
| 5uxcA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.65 | 53.0 | 3.59e-01 | 90.6% | 68.4% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.63 | 47.0 | 4.20e-01 | 81.1% | 74.0% |
| 1o82A00 | 1.20.225.10 | Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 | 0.59 | 48.0 | 4.55e-01 | 100.0% | 87.1% |
| 2nr4A02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.58 | 44.0 | 4.35e-01 | 94.3% | 77.6% |
| 2a5yB01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.55 | 46.0 | 3.79e-01 | 100.0% | 52.3% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.54 | 38.0 | 3.41e-01 | 79.2% | 76.5% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.51 | 34.0 | 3.23e-01 | 77.4% | 52.8% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3926918 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 47.0 | 3.28e-01 | 77.4% | 24.9% |
| 4615565 | 101.1.1.249 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SGIII | 0.64 | 50.0 | 4.31e-01 | 86.8% | 75.3% |
| 5012790 | 7076.1.1.0 ↗ | 0.64 | 44.0 | 3.93e-01 | 71.7% | 92.0% | |
| 4473504 | 304.136.1.3 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SGIII | 0.62 | 48.0 | 4.09e-01 | 86.8% | 67.8% |
| 4034213 | 632.2.1.5 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1542 | 0.60 | 42.0 | 3.81e-01 | 77.4% | 91.3% |
| 4033037 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.57 | 39.0 | 3.60e-01 | 71.7% | 95.7% |
| 3406629 | 109.4.1.447 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PI4K_N | 0.56 | 44.0 | 2.77e-01 | 86.8% | 39.3% |
| 3231402 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.56 | 45.0 | 4.41e-01 | 92.5% | 90.0% |
| 3940014 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.55 | 45.0 | 4.50e-01 | 92.5% | 90.9% |
| 3930036 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.55 | 38.0 | 3.61e-01 | 88.7% | 60.0% |
| 3282529 | 632.1.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid | 0.55 | 41.0 | 3.37e-01 | 83.0% | 63.8% |
| 3225286 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.53 | 43.0 | 4.17e-01 | 92.5% | 90.0% |
| 3816224 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.52 | 41.0 | 3.73e-01 | 84.9% | 80.0% |
| 4672360 | 604.1.1.4 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SbsC_C | 0.51 | 40.0 | 3.55e-01 | 92.5% | 71.8% |
| 4033046 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.50 | 33.0 | 3.14e-01 | 71.7% | 89.3% |
| 3724622 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.50 | 41.0 | 3.90e-01 | 96.2% | 78.5% |