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LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00097

Bact-Vir

LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00097

Identity

Kingdom:
phage

Quality

76.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-79
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3r3pB00 3.40.960.10 Alpha Beta › 3-Layer(aba) Sandwich › Endonuclease; Chain A › VSR Endonuclease 0.83 70.0 6.20e-01 100.0% 65.3%
4wpgA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.70 61.0 4.43e-01 100.0% 85.2%
1texA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 58.0 4.06e-01 97.2% 87.9%
1z8hA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.67 58.0 4.27e-01 100.0% 94.6%
4p02A02 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.66 58.0 4.00e-01 98.6% 39.7%
4c1bA02 3.40.50.12700 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 56.0 5.04e-01 98.6% 86.4%
3gbvA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 56.0 4.46e-01 97.2% 50.3%
4ex6A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.65 54.0 4.26e-01 93.0% 60.5%
4q34A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.65 56.0 3.70e-01 100.0% 45.5%
3qk7A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 51.0 4.19e-01 93.0% 45.7%
8dbsG01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.64 53.0 3.84e-01 95.8% 44.5%
4axsA00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.63 50.0 3.42e-01 90.1% 70.1%
1fs0G01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.63 54.0 4.48e-01 98.6% 76.2%
3a4lB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 52.0 3.93e-01 94.4% 96.6%
2derB01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.62 54.0 3.92e-01 98.6% 56.2%
4joqA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 49.0 4.04e-01 93.0% 45.4%
3qi7A01 3.40.50.11400 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 51.0 4.15e-01 94.4% 95.2%
4c5cA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 45.0 4.25e-01 85.9% 65.5%
3ktbA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 46.0 4.05e-01 83.1% 57.5%
8g0cG01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.60 49.0 3.61e-01 94.4% 47.9%
3hcwA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 49.0 4.02e-01 95.8% 47.9%
2i9iA00 3.30.160.180 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Putative neuraminyllactose-binding hemagglutinin homolog like domain 0.59 49.0 3.47e-01 91.5% 86.9%
4jd0A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.59 47.0 3.35e-01 93.0% 41.2%
1nj1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.58 49.0 4.40e-01 95.8% 95.2%
1pyoC00 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 48.0 3.83e-01 95.8% 46.0%
5mv0A01 3.30.70.2640 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Arenavirus RNA polymerase 0.58 42.0 3.93e-01 77.5% 61.8%
4nesA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.58 47.0 3.62e-01 90.1% 50.9%
4ycsA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 50.0 4.19e-01 98.6% 95.1%
4rxuA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 49.0 3.98e-01 100.0% 81.0%
3egcA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 48.0 3.96e-01 94.4% 91.0%
1isiA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 43.0 3.58e-01 81.7% 83.6%
3n8hA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 46.0 3.56e-01 93.0% 65.9%
4gp6A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 50.0 3.79e-01 100.0% 84.2%
3a1iA02 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.56 46.0 2.92e-01 97.2% 46.5%
1xmtA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 48.0 4.41e-01 95.8% 73.7%
3ialA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 46.0 3.97e-01 94.4% 58.0%
2mp4A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.56 47.0 3.71e-01 100.0% 48.5%
7yq0B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 47.0 3.70e-01 100.0% 89.2%
2o3rA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 42.0 3.54e-01 83.1% 90.3%
3k1yA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.55 47.0 3.57e-01 100.0% 83.0%
1hqz800 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.55 46.0 3.85e-01 98.6% 53.0%
4rweA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 42.0 3.60e-01 93.0% 48.4%
2ljpA00 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 35.0 2.99e-01 70.4% 52.1%
4i1tA02 3.30.70.2640 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Arenavirus RNA polymerase 0.52 37.0 3.56e-01 77.5% 64.3%
1gyxA01 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.52 39.0 4.05e-01 85.9% 93.8%
3ckmA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 44.0 3.38e-01 100.0% 81.9%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3281852 2008.1.1.14 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Vsr 0.86 79.0 6.10e-01 98.6% 55.2%
4467650 2008.1.1.167 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Vsr, DUF559 0.85 76.0 6.05e-01 97.2% 62.2%
3962618 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.84 71.0 5.91e-01 100.0% 54.2%
4984120 2008.1.1.17 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF559 0.83 71.0 6.18e-01 98.6% 62.9%
5080733 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.82 76.0 6.11e-01 100.0% 58.5%
4995705 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.79 60.0 4.74e-01 83.1% 40.7%
4927469 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.76 67.0 5.53e-01 100.0% 55.2%
4995722 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.76 64.0 5.75e-01 95.8% 67.0%
3627662 2007.15.1.9 a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › MAP3K_TRAF_bd, DRHyd-ASK 0.73 57.0 4.23e-01 90.1% 33.3%
3217236 2007.9.1.6 a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › MAP3K_TRAF_bd+DRHyd-ASK 0.73 58.0 4.27e-01 91.5% 33.9%
3278386 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.70 60.0 4.99e-01 100.0% 53.8%
3939442 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.69 57.0 4.47e-01 91.5% 43.3%
4529580 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.67 56.0 4.35e-01 94.4% 89.4%
4239812 2004.1.1.105 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinase-PPPase 0.66 57.0 4.54e-01 100.0% 77.4%
4281154 2004.1.1.191 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 0.66 57.0 4.30e-01 100.0% 96.2%
4218879 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.66 55.0 4.32e-01 94.4% 90.3%
3607169 7524.1.1.0 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like 0.65 44.0 3.40e-01 70.4% 47.5%
4543638 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.64 56.0 4.35e-01 100.0% 87.9%
3250562 2004.1.1.164 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc 0.64 56.0 4.13e-01 100.0% 93.8%
3307607 2007.2.3.3 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N 0.62 53.0 3.42e-01 100.0% 35.8%
3401572 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.62 52.0 3.91e-01 97.2% 36.8%
4460669 2003.1.10.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.62 44.0 4.15e-01 90.1% 61.1%
3218392 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.61 52.0 3.42e-01 98.6% 83.0%
3499612 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.61 46.0 4.08e-01 97.2% 53.6%
4947837 2005.1.1.17 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.61 50.0 3.42e-01 93.0% 78.1%
4202670 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.61 53.0 3.73e-01 97.2% 40.9%
3168508 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 53.0 3.85e-01 100.0% 75.7%
137390 2485.1.1.24 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › ArsD 0.60 46.0 4.05e-01 83.1% 57.5%
4928080 2003.1.5.23 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_4 0.60 42.0 3.38e-01 74.6% 75.3%
3250766 2007.1.1.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.60 52.0 3.58e-01 98.6% 97.6%
3503419 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 51.0 4.12e-01 100.0% 77.3%
4246110 7519.1.1.1 a/b three-layered sandwiches › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP-synt 0.60 50.0 3.39e-01 97.2% 31.8%
3664522 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.59 51.0 3.17e-01 97.2% 22.0%
869081 2003.1.6.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like 0.59 48.0 3.64e-01 93.0% 50.8%
5055198 2007.1.6.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain 0.59 47.0 4.35e-01 90.1% 68.4%
5073063 2004.1.1.163 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › KTI12 0.59 51.0 3.89e-01 100.0% 86.1%
3438965 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.59 48.0 4.34e-01 93.0% 91.0%
4532128 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.59 49.0 3.74e-01 100.0% 98.5%
3596162 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 48.0 3.57e-01 93.0% 66.8%
1147797 2007.1.2.9 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › DUF3798 0.58 47.0 4.05e-01 94.4% 59.2%
4853117 2484.1.1.10 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.58 44.0 3.88e-01 83.1% 77.8%
3673170 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.58 43.0 4.23e-01 84.5% 73.8%
4573327 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.58 44.0 3.49e-01 84.5% 83.0%
5037677 2007.1.10.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › PrpR receptor domain-like 0.57 46.0 4.20e-01 88.7% 68.4%
4785836 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.57 48.0 3.77e-01 100.0% 91.2%
5083539 7597.1.1.0 a/b three-layered sandwiches › Endolysin C-terminal domain › Endolysin C-terminal domain › Endolysin C-terminal domain 0.57 42.0 3.94e-01 91.5% 61.1%
3885829 7516.1.1.37 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › CHGN 0.57 48.0 3.27e-01 97.2% 35.4%
4246647 2003.1.1.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.56 42.0 3.52e-01 81.7% 77.7%
3378801 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.56 46.0 4.41e-01 100.0% 87.8%
3683056 7590.1.1.7 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › MID_MedPIWI 0.55 47.0 3.45e-01 100.0% 81.5%
3457302 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.54 40.0 3.17e-01 84.5% 76.5%
3664476 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.53 45.0 3.65e-01 100.0% 58.0%
3512209 2007.25.1.1 a/b three-layered sandwiches › Flavodoxin-like › Rossmann-like domain in Ribosomal protein L1 › Rossmann-like domain in Ribosomal protein L1 › Ribosomal_L1 0.52 42.0 3.72e-01 97.2% 96.7%
3260350 2484.1.1.10 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.52 39.0 3.31e-01 84.5% 83.1%
3974537 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 39.0 3.31e-01 84.5% 49.6%
3960263 2007.1.20.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Dehydratase-like › ILVD_EDD 0.51 43.0 3.37e-01 95.8% 48.7%