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LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00118
Bact-VirLacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00118
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-86_135-166
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04851.22 best | ResIII | 26.7 | 6.80e-06 | 94.0% | 46.3% |
CATH (55)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4zcfC01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.85 | 73.0 | 5.51e-01 | 90.5% | 80.7% |
| 4xqkB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.83 | 71.0 | 5.60e-01 | 90.5% | 66.4% |
| 2ykgA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.79 | 71.0 | 5.64e-01 | 94.8% | 61.6% |
| 3mwyW03 | 3.40.50.10810 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tandem AAA-ATPase domain | 0.79 | 74.0 | 5.48e-01 | 100.0% | 60.8% |
| 8oosG01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.78 | 73.0 | 5.87e-01 | 99.1% | 67.5% |
| 2zpaA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.78 | 48.0 | 4.53e-01 | 74.1% | 52.2% |
| 1rifA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.77 | 71.0 | 5.86e-01 | 97.4% | 67.7% |
| 8alzB05 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.77 | 71.0 | 5.77e-01 | 99.1% | 67.3% |
| 2fwrA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.73 | 54.0 | 4.37e-01 | 75.0% | 79.9% |
| 6znpA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.73 | 67.0 | 5.44e-01 | 100.0% | 67.9% |
| 1gm5A04 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.73 | 67.0 | 5.52e-01 | 99.1% | 70.9% |
| 3berA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.72 | 67.0 | 5.33e-01 | 100.0% | 64.1% |
| 4ceiB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.72 | 51.0 | 4.38e-01 | 73.3% | 61.1% |
| 8tbxA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.72 | 66.0 | 5.23e-01 | 100.0% | 65.3% |
| 4ljyA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.71 | 65.0 | 4.96e-01 | 99.1% | 58.8% |
| 1pjrA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 60.0 | 5.00e-01 | 99.1% | 70.3% |
| 1qhhA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 54.0 | 4.81e-01 | 87.9% | 61.6% |
| 6qv4A04 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 47.0 | 3.98e-01 | 75.0% | 72.6% |
| 2kbeA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 60.0 | 4.78e-01 | 100.0% | 61.9% |
| 1o0sA03 | 3.40.50.10380 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Malic enzyme, N-terminal domain | 0.64 | 50.0 | 4.11e-01 | 85.3% | 71.0% |
| 7bfpA01 | 3.40.50.10890 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 47.0 | 4.46e-01 | 90.5% | 65.3% |
| 4dzzA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 42.0 | 3.55e-01 | 74.1% | 39.3% |
| 4c4aA03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.61 | 49.0 | 4.55e-01 | 93.1% | 68.8% |
| 3fpfA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 51.0 | 3.90e-01 | 97.4% | 40.2% |
| 5h02A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 46.0 | 4.00e-01 | 94.0% | 52.8% |
| 8k5lA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 46.0 | 3.85e-01 | 91.4% | 47.0% |
| 4rv9A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 48.0 | 4.03e-01 | 94.8% | 49.8% |
| 1ve3A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 47.0 | 3.87e-01 | 94.0% | 46.2% |
| 1iuqA02 | 3.40.1130.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase | 0.60 | 53.0 | 4.07e-01 | 100.0% | 51.1% |
| 3zm6A03 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.59 | 46.0 | 4.23e-01 | 83.6% | 88.1% |
| 3bt7A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 49.0 | 3.97e-01 | 91.4% | 47.8% |
| 3dlcA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 47.0 | 3.78e-01 | 94.0% | 45.2% |
| 3oj0A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 40.0 | 3.78e-01 | 87.9% | 59.4% |
| 4lwoE01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 49.0 | 4.44e-01 | 94.0% | 70.6% |
| 3busB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 45.0 | 3.56e-01 | 90.5% | 40.5% |
| 1xdzA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 51.0 | 4.04e-01 | 99.1% | 53.8% |
| 2xr1B04 | 3.40.50.10890 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 47.0 | 4.12e-01 | 90.5% | 64.2% |
| 1xxlA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 43.0 | 3.39e-01 | 89.7% | 38.9% |
| 1vddA03 | 3.40.1360.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › | 0.56 | 30.0 | 3.29e-01 | 93.1% | 62.0% |
| 3fijC00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.56 | 43.0 | 3.52e-01 | 82.8% | 85.1% |
| 2gn4B01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 43.0 | 3.46e-01 | 83.6% | 51.2% |
| 5je6A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 45.0 | 3.61e-01 | 96.6% | 43.8% |
| 6aieA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 48.0 | 4.12e-01 | 99.1% | 60.4% |
| 4iscA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 40.0 | 3.70e-01 | 90.5% | 57.7% |
| 1oxkB00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 41.0 | 4.00e-01 | 81.0% | 71.9% |
| 1wyuB03 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.54 | 42.0 | 3.26e-01 | 82.8% | 47.8% |
| 3rojA02 | 3.40.190.90 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › | 0.53 | 37.0 | 3.29e-01 | 75.9% | 49.1% |
| 4a2bA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 37.0 | 3.57e-01 | 72.4% | 71.7% |
| 4pneA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 45.0 | 3.46e-01 | 94.0% | 42.2% |
| 4i62A02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 29.0 | 3.22e-01 | 74.1% | 65.6% |
| 2uyoA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 46.0 | 3.52e-01 | 96.6% | 50.5% |
| 3fzgA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 46.0 | 3.91e-01 | 98.3% | 57.7% |
| 4iw7A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.52 | 40.0 | 3.24e-01 | 81.0% | 45.9% |
| 7pt4A01 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.51 | 45.0 | 3.86e-01 | 99.1% | 63.4% |
| 1yrlA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 36.0 | 2.99e-01 | 72.4% | 66.5% |
ECOD (71)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4009366 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.84 | 77.0 | 6.04e-01 | 95.7% | 60.9% |
| 5004461 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.83 | 74.0 | 5.66e-01 | 94.0% | 82.5% |
| 5082473 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.82 | 77.0 | 5.90e-01 | 100.0% | 67.9% |
| 3418714 | 2004.1.1.23 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom | 0.82 | 75.0 | 5.30e-01 | 98.3% | 46.4% |
| 3603150 | 2004.1.1.220 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 | 0.81 | 74.0 | 5.78e-01 | 96.6% | 73.0% |
| 5029435 | 2004.1.1.220 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 | 0.81 | 73.0 | 6.04e-01 | 95.7% | 72.3% |
| 3592535 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.81 | 73.0 | 5.64e-01 | 95.7% | 64.3% |
| 5006201 | 2004.1.1.220 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 | 0.80 | 75.0 | 5.88e-01 | 99.1% | 70.7% |
| 5031824 | 2004.1.1.220 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 | 0.80 | 75.0 | 4.72e-01 | 99.1% | 31.8% |
| 3473985 | 2004.1.1.23 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom | 0.80 | 74.0 | 5.62e-01 | 99.1% | 53.2% |
| 4013550 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.79 | 73.0 | 5.49e-01 | 99.1% | 54.0% |
| 3163557 | 2004.1.1.123 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_RecD | 0.79 | 62.0 | 5.28e-01 | 94.8% | 51.9% |
| 3968942 | 2004.1.1.23 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom | 0.79 | 73.0 | 5.26e-01 | 99.1% | 43.0% |
| 5049294 | 2004.1.1.23 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom | 0.79 | 73.0 | 5.35e-01 | 99.1% | 47.7% |
| 3628354 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.78 | 73.0 | 5.76e-01 | 99.1% | 61.8% |
| 3937474 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.78 | 73.0 | 5.71e-01 | 100.0% | 60.9% |
| 3488779 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.78 | 72.0 | 5.55e-01 | 99.1% | 56.3% |
| 3167404 | 2004.1.1.23 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom | 0.78 | 72.0 | 4.95e-01 | 99.1% | 64.1% |
| 3243148 | 2004.1.1.23 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom | 0.78 | 70.0 | 4.78e-01 | 96.6% | 36.6% |
| 2984666 | 2004.1.1.144 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD_2 | 0.78 | 72.0 | 5.51e-01 | 99.1% | 93.6% |
| 3668729 | 2004.1.1.23 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom | 0.78 | 72.0 | 5.27e-01 | 100.0% | 51.9% |
| 4014869 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.77 | 72.0 | 4.98e-01 | 99.1% | 39.4% |
| 5072107 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.77 | 72.0 | 5.61e-01 | 99.1% | 57.8% |
| 4971856 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.77 | 71.0 | 5.34e-01 | 99.1% | 61.5% |
| 3219515 | 2004.1.1.23 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom | 0.77 | 65.0 | 5.19e-01 | 90.5% | 60.5% |
| 4646406 | 2004.1.1.123 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_RecD | 0.77 | 61.0 | 5.30e-01 | 94.0% | 57.1% |
| 4413358 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.75 | 69.0 | 5.32e-01 | 99.1% | 68.4% |
| 9727 | 2004.1.1.428 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, HDA2-3 | 0.75 | 55.0 | 3.80e-01 | 75.0% | 53.8% |
| 4967991 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.75 | 70.0 | 5.60e-01 | 99.1% | 66.7% |
| 4664971 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.74 | 68.0 | 5.48e-01 | 99.1% | 62.8% |
| 4625018 | 2004.1.1.23 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom | 0.74 | 68.0 | 5.36e-01 | 99.1% | 58.7% |
| 3170901 | 2004.1.1.364 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C | 0.74 | 68.0 | 4.42e-01 | 99.1% | 31.4% |
| 3173187 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.74 | 68.0 | 5.00e-01 | 99.1% | 52.3% |
| 4986882 | 2004.1.1.161 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TmcA_N | 0.73 | 58.0 | 4.92e-01 | 90.5% | 53.0% |
| 3491980 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.72 | 66.0 | 5.10e-01 | 99.1% | 55.1% |
| 3483530 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.72 | 66.0 | 5.08e-01 | 99.1% | 55.1% |
| 3222867 | 2004.1.1.186 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12 | 0.72 | 57.0 | 4.57e-01 | 85.3% | 45.1% |
| 3604447 | 2004.1.1.193 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_19 | 0.70 | 62.0 | 4.99e-01 | 96.6% | 51.4% |
| 3578404 | 2004.1.1.186 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12 | 0.68 | 59.0 | 4.76e-01 | 93.1% | 51.2% |
| 3473187 | 2006.1.5.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Hist_deacetyl | 0.68 | 61.0 | 3.97e-01 | 99.1% | 49.0% |
| 4888963 | 2004.1.1.161 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TmcA_N | 0.67 | 51.0 | 4.03e-01 | 90.5% | 39.0% |
| 5024759 | 2004.1.1.67 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA | 0.65 | 46.0 | 3.66e-01 | 73.3% | 37.0% |
| 5079348 | 7577.1.1.10 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › GDC-P | 0.63 | 52.0 | 4.24e-01 | 91.4% | 64.3% |
| 5068978 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.63 | 55.0 | 4.56e-01 | 95.7% | 59.5% |
| 5010241 | 2004.1.1.103 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sua5_C | 0.60 | 39.0 | 3.88e-01 | 73.3% | 62.5% |
| 5024580 | 7515.1.1.6 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Phosphodiest | 0.60 | 50.0 | 3.68e-01 | 89.7% | 67.4% |
| 3283047 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.59 | 46.0 | 3.55e-01 | 92.2% | 37.3% |
| 4948483 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.58 | 43.0 | 3.93e-01 | 87.9% | 57.6% |
| 3632376 | 2003.1.5.21 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CMAS | 0.58 | 43.0 | 4.15e-01 | 91.4% | 68.1% |
| 4565833 | 2007.2.5.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese | 0.58 | 36.0 | 3.73e-01 | 73.3% | 67.6% |
| None | — | 0.57 | 50.0 | 4.04e-01 | 99.1% | 55.3% | |
| 4987210 | 2003.1.5.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_2 | 0.56 | 44.0 | 3.60e-01 | 94.8% | 43.8% |
| 5039539 | 7558.1.1.1 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransferase | 0.56 | 47.0 | 3.90e-01 | 100.0% | 49.8% |
| None | — | 0.56 | 50.0 | 4.04e-01 | 100.0% | 54.8% | |
| 3931535 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.55 | 49.0 | 3.79e-01 | 100.0% | 45.6% |
| 3413048 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.55 | 45.0 | 3.02e-01 | 91.4% | 65.0% |
| 5028345 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.54 | 40.0 | 3.35e-01 | 92.2% | 44.7% |
| 3271301 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.54 | 46.0 | 3.49e-01 | 93.1% | 39.3% |
| 3180720 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.53 | 46.0 | 3.34e-01 | 96.6% | 54.8% |
| 5049445 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.53 | 43.0 | 3.34e-01 | 94.8% | 39.2% |
| 5030542 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.53 | 46.0 | 4.36e-01 | 97.4% | 84.3% |
| 3330053 | 7533.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK | 0.53 | 38.0 | 3.14e-01 | 76.7% | 41.3% |
| 1498308 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.53 | 45.0 | 3.48e-01 | 94.0% | 43.2% |
| 4976682 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.52 | 44.0 | 2.99e-01 | 96.6% | 30.9% |
| 3503532 | 7550.1.1.1 ↗ | a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase | 0.52 | 37.0 | 3.75e-01 | 79.3% | 73.3% |
| 4541370 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.52 | 41.0 | 3.01e-01 | 85.3% | 32.7% |
| 4135042 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.51 | 43.0 | 3.30e-01 | 91.4% | 44.0% |
| 4977259 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 46.0 | 3.84e-01 | 100.0% | 84.9% |
| 5058397 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 45.0 | 3.70e-01 | 97.4% | 59.5% |
| None | — | 0.51 | 45.0 | 3.87e-01 | 99.1% | 61.7% | |
| 4983991 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.51 | 38.0 | 3.40e-01 | 89.7% | 53.8% |
D2
medium
residues 174-253
Domain cluster:
rep: gwa1_scaffold_1_prodigal-single.1__X__X__00237__D109-187
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14890.12 best | Intein_splicing | 39.1 | 9.10e-10 | 98.8% | 53.5% |
| PF01079.26 | Hint | 34.3 | 2.70e-08 | 98.8% | 32.4% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1at0A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.69 | 63.0 | 5.13e-01 | 100.0% | 58.6% |
| 1mi8A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.66 | 59.0 | 4.90e-01 | 100.0% | 57.4% |
| 4lx3A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.65 | 57.0 | 5.35e-01 | 100.0% | 83.2% |
| 2lwyA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.65 | 58.0 | 4.87e-01 | 100.0% | 69.6% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4565870 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.73 | 64.0 | 5.20e-01 | 100.0% | 55.5% |
| 5002632 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.73 | 64.0 | 5.26e-01 | 100.0% | 58.4% |
| 3257888 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.71 | 63.0 | 5.15e-01 | 100.0% | 55.3% |
| 4983458 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.71 | 62.0 | 4.96e-01 | 100.0% | 63.6% |
| 4993871 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.71 | 62.0 | 5.55e-01 | 100.0% | 71.3% |
| 3518586 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.69 | 62.0 | 4.60e-01 | 100.0% | 41.0% |
| 4487998 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.69 | 62.0 | 4.81e-01 | 100.0% | 48.6% |
| 4600944 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.69 | 62.0 | 4.80e-01 | 100.0% | 48.6% |
| 4070999 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.69 | 62.0 | 4.98e-01 | 100.0% | 54.8% |
| 3877825 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.69 | 62.0 | 4.55e-01 | 100.0% | 44.8% |
| 4975578 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.67 | 60.0 | 4.13e-01 | 100.0% | 35.3% |
| 4996523 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.66 | 60.0 | 4.46e-01 | 100.0% | 81.5% |
| 5028788 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.66 | 58.0 | 4.87e-01 | 100.0% | 58.6% |
| 3495262 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.66 | 58.0 | 4.52e-01 | 100.0% | 48.3% |
| 4779324 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.65 | 57.0 | 5.35e-01 | 100.0% | 83.2% |
| 3230518 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.65 | 57.0 | 4.65e-01 | 100.0% | 60.0% |
| 4500960 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.65 | 55.0 | 4.67e-01 | 100.0% | 58.6% |
| 5030213 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.63 | 57.0 | 4.59e-01 | 98.8% | 70.7% |
| 4978364 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.58 | 50.0 | 4.51e-01 | 100.0% | 91.3% |
| 3581887 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.54 | 20.0 | 2.79e-01 | 70.0% | 62.5% |
| 3243108 | 389.3.1.0 ↗ | few secondary structure elements › EGF-like › LDL receptor-like module › LDL receptor-like module | 0.50 | 21.0 | 2.45e-01 | 71.2% | 49.1% |