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LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00123

Bact-Vir

LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00123

Identity

Kingdom:
phage

Quality

73.9 mean pLDDT

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-114
PDB
D2 high residues 119-224
PDB
Domain cluster: rep: js4906-29-5_S40_scaffold_13_prodigal-single.1__X__X__00046__D3-97
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wfxA02 3.20.170.30 Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › 0.82 65.0 7.03e-01 93.4% 97.8%
2o0pA00 3.20.170.20 Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › Protein of unknown function DUF952 0.74 64.0 6.26e-01 95.3% 86.0%
2x5yA00 3.90.228.10 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.69 62.0 5.22e-01 97.2% 66.1%
1nh8A03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 29.0 3.63e-01 85.8% 77.6%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 25.0 3.15e-01 95.3% 66.7%
1sjiA03 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 37.0 3.55e-01 78.3% 71.0%
7rxpA01 2.20.100.10 Mainly Beta › Single Sheet › TSP-1 type 1 repeat › Thrombospondin type-1 (TSP1) repeat 0.50 28.0 3.46e-01 86.8% 96.6%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4296568 237.1.1.4 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.85 72.0 7.57e-01 100.0% 97.9%
4303698 237.1.1.4 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.85 70.0 7.42e-01 99.1% 97.9%
4125268 237.1.1.4 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.84 69.0 7.44e-01 96.2% 100.0%
4546240 237.1.1.4 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.84 68.0 7.41e-01 96.2% 100.0%
4008473 237.1.1.4 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.84 68.0 7.07e-01 97.2% 90.9%
5061730 237.1.1.4 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.84 68.0 7.39e-01 96.2% 100.0%
4679144 237.1.1.4 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.84 71.0 7.45e-01 100.0% 98.9%
4622968 237.1.1.4 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.83 68.0 7.29e-01 97.2% 100.0%
3106804 237.1.1.4 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.83 71.0 7.21e-01 100.0% 92.2%
4994805 237.1.1.4 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.81 69.0 7.01e-01 100.0% 92.2%
5060086 237.1.1.4 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.81 69.0 7.24e-01 100.0% 100.0%
5077692 237.1.1.4 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.79 70.0 7.08e-01 100.0% 95.2%
4013919 237.1.1.9 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › DUF952 0.75 64.0 6.36e-01 95.3% 88.2%
4859645 237.1.1.3 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › Enterotoxin_a 0.75 67.0 5.14e-01 96.2% 55.8%
3344114 237.1.1.9 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › DUF952 0.75 66.0 6.38e-01 95.3% 87.5%
7450 237.1.1.9 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › DUF952 0.74 64.0 6.28e-01 95.3% 86.7%
3882775 237.1.1.4 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.73 68.0 6.50e-01 100.0% 88.3%
4016125 237.1.1.4 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.71 66.0 6.31e-01 100.0% 92.5%
3776068 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.70 64.0 5.19e-01 98.1% 65.3%
3543256 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.69 62.0 5.15e-01 96.2% 67.8%
3602129 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.69 62.0 5.35e-01 98.1% 89.0%
3879371 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.68 61.0 5.10e-01 97.2% 66.1%
4937896 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.68 58.0 5.94e-01 95.3% 97.0%
3263315 237.1.1.29 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › DUF4291 0.67 59.0 4.97e-01 96.2% 84.0%
3196342 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.67 60.0 5.03e-01 97.2% 59.2%
3711853 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.67 60.0 4.92e-01 98.1% 61.6%
3724972 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.66 59.0 4.38e-01 97.2% 40.0%
3962585 4052.1.1.0 ↗ beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like 0.52 34.0 3.68e-01 100.0% 78.9%
3801875 604.1.1.135 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF155 0.51 42.0 3.20e-01 91.5% 88.2%
3736895 604.3.1.11 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.50 42.0 3.20e-01 91.5% 91.0%