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LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00199

Bact-Vir

LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00199

Identity

Kingdom:
phage

Quality

85.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 41-92
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vhxF00 2.60.40.4330 Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain 0.71 60.0 4.81e-01 94.2% 76.5%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.70 55.0 3.88e-01 86.5% 32.5%
8cukB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.70 51.0 3.13e-01 100.0% 12.3%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 58.0 3.61e-01 98.1% 17.3%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.68 57.0 4.70e-01 100.0% 51.5%
3uaqB02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.68 57.0 4.08e-01 98.1% 33.7%
3fljA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 55.0 4.10e-01 100.0% 34.8%
5escA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 56.0 4.43e-01 100.0% 90.8%
3f8xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 54.0 4.11e-01 100.0% 37.1%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.66 55.0 4.26e-01 98.1% 57.7%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.65 52.0 4.47e-01 100.0% 54.0%
6x05A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 55.0 3.35e-01 100.0% 16.7%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.63 55.0 3.91e-01 100.0% 75.6%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 55.0 4.03e-01 100.0% 86.6%
1xszA03 3.30.310.140 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › sec7 domains 0.62 53.0 3.85e-01 100.0% 38.2%
3mi6B03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 51.0 4.22e-01 100.0% 96.2%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 50.0 4.86e-01 100.0% 85.0%
1q48A00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.61 43.0 3.33e-01 88.5% 30.6%
3fw6A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 51.0 4.01e-01 100.0% 80.3%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.60 50.0 4.09e-01 100.0% 50.5%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 49.0 3.15e-01 100.0% 19.0%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.59 48.0 3.61e-01 100.0% 89.2%
2p97A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.59 45.0 3.15e-01 90.4% 91.0%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.58 45.0 3.97e-01 94.2% 55.1%
1xfdA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.58 50.0 2.93e-01 100.0% 15.1%
7bwcA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 47.0 2.98e-01 100.0% 18.6%
3a21A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 49.0 4.17e-01 100.0% 98.9%
4ii2A06 3.10.290.60 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-activating enzyme E1, UFD domain 0.58 38.0 3.31e-01 71.2% 77.7%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 44.0 4.06e-01 96.2% 66.7%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.56 44.0 3.72e-01 94.2% 49.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 3.31e-01 76.9% 43.4%
1s1dA00 2.120.10.100 Mainly Beta › 6 Propeller › Neuraminidase › Apyrase 0.56 45.0 2.87e-01 100.0% 25.6%
1lwjA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 46.0 4.68e-01 94.2% 100.0%
4hn7A00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 48.0 4.11e-01 100.0% 83.5%
1wnhA02 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 45.0 3.58e-01 100.0% 50.0%
1bbuA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 44.0 3.33e-01 96.2% 47.9%
2i5hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 45.0 4.14e-01 100.0% 95.8%
8adlB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 2.85e-01 100.0% 21.7%
4bfmA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 42.0 2.71e-01 100.0% 25.6%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 41.0 3.10e-01 100.0% 85.9%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.50 42.0 3.52e-01 100.0% 59.2%
1avwB00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 40.0 2.99e-01 100.0% 97.7%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3378755 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.71 63.0 4.74e-01 100.0% 46.4%
3181617 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.71 58.0 3.45e-01 100.0% 12.1%
4029094 3257.1.1.0 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain 0.71 55.0 3.77e-01 98.1% 23.0%
3937921 5.1.3.170 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_IFT140_2nd 0.70 61.0 3.72e-01 100.0% 16.7%
3679340 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.69 60.0 4.69e-01 98.1% 56.4%
3212863 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.68 57.0 3.56e-01 96.2% 24.3%
3663339 331.4.1.7 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › DUF1499 0.68 54.0 3.96e-01 98.1% 31.0%
3725348 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.68 60.0 3.88e-01 100.0% 37.0%
3484299 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 58.0 3.40e-01 100.0% 12.8%
3174396 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 56.0 3.34e-01 96.2% 18.2%
3504134 12.1.1.23 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › hGDE_central 0.65 57.0 4.42e-01 98.1% 98.2%
3799100 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 53.0 3.28e-01 100.0% 14.0%
4800489 5.1.13.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › Propeller domain of DCAF15 › DCAF15_WD40 0.65 53.0 3.59e-01 100.0% 23.6%
3947082 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 55.0 4.66e-01 100.0% 56.7%
3177523 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.64 56.0 3.78e-01 100.0% 44.5%
3799045 206.1.2.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › Ins_P5_2-kin 0.64 54.0 3.22e-01 100.0% 30.8%
3348291 243.1.1.53 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › WI12 0.64 53.0 3.90e-01 100.0% 46.8%
4959619 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.64 56.0 3.93e-01 100.0% 44.7%
3255394 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.64 55.0 3.55e-01 100.0% 28.8%
3214215 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.64 53.0 4.27e-01 100.0% 49.1%
3261801 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.64 55.0 3.56e-01 100.0% 37.6%
3567723 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.63 54.0 3.47e-01 100.0% 27.7%
5075421 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.62 55.0 3.56e-01 100.0% 37.1%
3259014 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.62 54.0 3.49e-01 100.0% 31.6%
4014135 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.62 51.0 3.66e-01 100.0% 70.6%
3559665 213.1.1.6 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ 0.62 51.0 3.83e-01 94.2% 39.2%
3580198 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.62 53.0 3.72e-01 100.0% 41.1%
3467036 216.1.1.2 a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.61 51.0 4.04e-01 100.0% 73.3%
3592804 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.61 52.0 3.37e-01 100.0% 35.3%
1122053 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.60 50.0 3.27e-01 100.0% 20.1%
3231099 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.60 50.0 4.31e-01 100.0% 57.6%
4890223 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.60 47.0 2.88e-01 100.0% 13.0%
3744143 220.1.1.32 beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.60 53.0 3.80e-01 100.0% 68.0%
2526491 216.1.1.2 a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.60 50.0 3.72e-01 100.0% 62.3%
3706632 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.60 50.0 3.65e-01 98.1% 49.7%
3827973 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.59 51.0 3.18e-01 100.0% 29.7%
3222814 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 52.0 4.49e-01 98.1% 65.0%
3577742 6070.1.1.0 few secondary structure elements › Sortilin C-terminal domain › Sortilin C-terminal domain › Sortilin C-terminal domain 0.59 42.0 4.39e-01 76.9% 88.9%
3596847 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 51.0 4.11e-01 100.0% 51.4%
4966380 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.59 48.0 3.14e-01 100.0% 79.6%
3397467 243.3.1.35 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF229 0.58 48.0 3.74e-01 100.0% 48.1%
3700022 220.1.1.14 beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.58 51.0 4.07e-01 100.0% 51.4%
4932967 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.58 49.0 3.12e-01 100.0% 72.9%
5056218 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.58 47.0 4.31e-01 94.2% 75.7%
3257870 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.57 48.0 3.61e-01 98.1% 84.6%
4947582 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.57 46.0 3.02e-01 100.0% 75.4%
5069442 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.57 47.0 3.03e-01 100.0% 22.1%
3917645 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 49.0 3.81e-01 100.0% 45.8%
5007185 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.55 48.0 3.52e-01 100.0% 62.1%
3648057 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 45.0 2.78e-01 100.0% 29.2%
4927080 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.54 40.0 3.14e-01 96.2% 33.1%
3684759 331.3.1.10 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AtaL 0.54 42.0 3.01e-01 96.2% 27.6%
3261183 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 45.0 3.22e-01 100.0% 30.3%
5028140 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.53 44.0 3.98e-01 96.2% 66.7%
3924310 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 42.0 2.63e-01 100.0% 24.9%
4977517 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 41.0 3.84e-01 100.0% 77.3%