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LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00206

Bact-Vir

LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00206

Identity

Kingdom:
phage

Quality

88.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 113-201
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3girA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.61 47.0 4.82e-01 83.1% 88.4%
1yx2A02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.60 47.0 4.75e-01 84.3% 89.5%
1wsrA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.59 45.0 4.52e-01 83.1% 83.5%
4paaA04 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.57 44.0 4.02e-01 83.1% 64.1%
2frgP00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 4.20e-01 85.4% 71.7%
1x31C02 3.30.70.1520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Heterotetrameric sarcosine oxidase 0.55 40.0 4.17e-01 84.3% 85.0%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.54 44.0 4.04e-01 86.5% 79.8%
5x6vG00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 43.0 3.77e-01 85.4% 75.8%
1yprA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.54 43.0 3.84e-01 86.5% 80.8%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 37.0 3.39e-01 74.2% 76.2%
1q8mA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.78e-01 85.4% 67.8%
5f1sA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.87e-01 85.4% 71.6%
1ap8A00 3.30.760.10 Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e 0.52 44.0 3.35e-01 96.6% 39.0%
3r7wC02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 42.0 3.96e-01 86.5% 79.4%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.52 46.0 3.85e-01 100.0% 67.5%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 39.0 3.45e-01 80.9% 82.1%
1u2hA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 35.0 3.46e-01 85.4% 64.6%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 42.0 3.43e-01 88.8% 71.7%
2esvD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.84e-01 85.4% 78.0%
2qsrA01 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.51 36.0 3.04e-01 84.3% 42.6%
7e6gA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.51 44.0 3.77e-01 96.6% 62.4%
3oh8A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 39.0 3.39e-01 83.1% 90.7%
3u0oA02 3.90.650.10 Alpha Beta › Alpha-Beta Complex › Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2 › PurM-like C-terminal domain 0.51 42.0 3.37e-01 92.1% 86.4%
1c8zA00 3.20.90.10 Alpha Beta › Alpha-Beta Barrel › Tubby Protein; Chain A › Tubby Protein; Chain A 0.51 40.0 2.87e-01 85.4% 89.1%
5fm5P00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 3.34e-01 85.4% 63.3%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.51 38.0 3.25e-01 83.1% 50.0%
4urgA00 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.50 43.0 3.67e-01 96.6% 62.0%
3hvaA00 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.50 43.0 3.58e-01 96.6% 57.4%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4498040 323.1.1.5 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.63 50.0 4.41e-01 86.5% 88.5%
5012894 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.61 44.0 4.78e-01 84.3% 90.7%
4263273 323.1.1.5 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.60 48.0 3.59e-01 87.6% 79.6%
3966925 304.107.1.2 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › SoxG 0.59 52.0 4.05e-01 100.0% 62.1%
2068689 304.107.1.1 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.58 48.0 4.14e-01 89.9% 59.0%
5045767 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.58 45.0 4.57e-01 95.5% 83.3%
2068824 304.107.1.1 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.57 51.0 3.55e-01 100.0% 44.6%
4656850 304.107.1.1 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.57 46.0 3.27e-01 89.9% 29.3%
4928566 223.2.1.62 a+b three layers › Profilin-like › profilin-like › profilin-like › DUF6659 0.56 46.0 4.12e-01 86.5% 80.8%
3789520 223.2.1.32 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.56 33.0 2.93e-01 100.0% 37.0%
5035456 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.56 38.0 4.00e-01 83.1% 78.8%
4563845 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.55 38.0 4.16e-01 91.0% 91.4%
3970318 304.107.1.0 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.55 45.0 3.45e-01 94.4% 37.7%
5050494 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.55 44.0 3.86e-01 85.4% 70.0%
4465073 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.55 44.0 4.21e-01 86.5% 85.6%
5052370 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 43.0 4.02e-01 84.3% 82.7%
5000881 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 42.0 3.56e-01 85.4% 62.6%
4024042 223.2.1.31 a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_2 0.54 43.0 3.43e-01 87.6% 70.8%
4960835 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.54 38.0 2.57e-01 74.2% 91.7%
4927211 223.2.1.62 a+b three layers › Profilin-like › profilin-like › profilin-like › DUF6659 0.54 44.0 3.95e-01 87.6% 80.8%
3640780 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 40.0 2.64e-01 80.9% 76.5%
3740470 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 38.0 2.66e-01 75.3% 95.6%
5043206 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 41.0 4.27e-01 83.1% 92.5%
4960515 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.53 43.0 3.93e-01 86.5% 77.4%
5051614 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 37.0 3.27e-01 73.0% 60.0%
5065216 223.7.1.0 a+b three layers › Profilin-like › FLJ32549 C-terminal domain-like › FLJ32549 C-terminal domain-like 0.52 41.0 4.07e-01 85.4% 80.0%
2879522 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.51 38.0 3.84e-01 86.5% 77.2%
3542381 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.51 38.0 3.94e-01 85.4% 83.5%
3601112 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.51 40.0 2.90e-01 85.4% 93.0%
5004606 306.2.1.0 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor 0.51 39.0 3.59e-01 83.1% 70.8%
3237087 317.1.1.1 a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E 0.51 44.0 3.39e-01 96.6% 65.5%
3266703 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.11e-01 79.8% 84.2%
3967247 304.48.1.14 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF 0.50 44.0 3.51e-01 97.8% 48.3%
D2 medium residues 9-45_91-101
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qaiB00 3.40.50.10580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ATPase, V1 complex, subunit F 0.69 59.0 4.83e-01 97.9% 74.7%
2exrA01 3.30.43.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 0.59 45.0 3.46e-01 89.6% 91.1%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 42.0 3.31e-01 77.1% 86.8%
3bjqA00 3.90.1690.10 Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain 0.53 39.0 2.41e-01 81.2% 66.6%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3462937 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.58 47.0 3.23e-01 93.8% 47.8%
4107517 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.51 44.0 3.45e-01 100.0% 68.6%
D3 medium residues 48-82
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s98A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.74 62.0 4.78e-01 100.0% 52.4%
3phsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 60.0 4.30e-01 100.0% 50.5%
8os3A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 54.0 4.15e-01 100.0% 47.8%
2ibgA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 51.0 3.85e-01 100.0% 43.1%
5noiA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 49.0 3.73e-01 100.0% 52.0%
6a48A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 45.0 3.22e-01 100.0% 34.5%
2vraA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 47.0 3.55e-01 100.0% 51.5%
5eiqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 44.0 3.55e-01 100.0% 47.3%
5mj3A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 44.0 3.58e-01 97.1% 45.2%
5k3xA02 2.60.40.650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 45.0 3.30e-01 100.0% 45.1%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.56 43.0 3.45e-01 100.0% 65.6%
6a48A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 42.0 2.99e-01 100.0% 50.0%
3lb6D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 43.0 3.45e-01 100.0% 52.2%
2dduA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 42.0 2.90e-01 100.0% 51.6%
5aq0B00 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.54 39.0 3.33e-01 100.0% 57.3%
4d7pA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.53 40.0 3.21e-01 100.0% 54.2%
3fg6A01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 36.0 3.01e-01 100.0% 35.4%
4ecnA02 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.52 37.0 2.84e-01 100.0% 51.6%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3791694 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.66 54.0 4.23e-01 100.0% 60.0%
3583165 11.1.1.866 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Rha78A_N 0.65 52.0 3.83e-01 100.0% 43.6%
3270012 10.32.1.18 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Endotoxin_C 0.64 49.0 3.46e-01 100.0% 39.9%
3742903 221.1.1.182 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBL_AVO1 0.63 50.0 4.01e-01 97.1% 45.0%
3883198 10.32.1.77 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Reelin_subrepeat-B 0.62 49.0 3.21e-01 100.0% 32.3%
5052643 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 47.0 3.43e-01 100.0% 36.8%
2438912 11.1.1.236 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mannosidase_ig 0.59 46.0 3.49e-01 100.0% 53.7%
2507149 375.1.1.48 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF35_N 0.58 44.0 4.50e-01 97.1% 100.0%
3764256 11.1.1.108 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.57 44.0 3.42e-01 100.0% 55.0%
4403193 10.32.1.244 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29989 0.56 42.0 3.17e-01 100.0% 39.8%
4933086 375.1.1.181 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PALP 0.56 42.0 3.14e-01 100.0% 29.2%
4028909 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 44.0 3.18e-01 100.0% 50.4%
3598717 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 37.0 2.80e-01 100.0% 21.7%
4262527 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 41.0 4.13e-01 94.3% 100.0%
3308755 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 41.0 2.93e-01 100.0% 46.4%
4937430 3769.1.1.0 0.53 39.0 3.74e-01 100.0% 68.9%
4933180 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 41.0 4.13e-01 97.1% 97.1%
5067952 11.1.1.288 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_13 0.53 40.0 3.19e-01 100.0% 53.7%
2486933 7032.1.1.1 a+b two layers › Paratox › Paratox › Paratox › Paratox 0.53 38.0 3.38e-01 100.0% 48.5%
3743800 2.9.1.1 beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.51 36.0 2.09e-01 80.0% 64.2%
4978088 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 40.0 2.99e-01 100.0% 41.7%
3252286 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 39.0 3.30e-01 100.0% 62.7%