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LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00280

Bact-Vir

LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00280

Identity

Kingdom:
phage

Quality

87.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-79
PDB
Domain cluster: rep: gwa1_scaffold_31_prodigal-single.1__X__X__00034__D7-87
D2 high residues 202-252
PDB
Domain cluster: rep: IMGVR_UViG_3300021426_000003-3300021426-Ga0224482_10000072181__D164-213
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07453.20 best NUMOD1 41.7 1.40e-10 68.6% 89.2%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 78.0 7.05e-01 100.0% 75.0%
2mtzA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.60 44.0 4.52e-01 92.2% 82.0%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.55 46.0 3.57e-01 100.0% 88.3%
4bf8A00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 44.0 3.58e-01 98.0% 71.8%
3rkgA01 2.40.128.330 Mainly Beta › Beta Barrel › Lipocalin › 0.54 45.0 3.82e-01 100.0% 83.0%
4tweA02 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.53 45.0 3.00e-01 100.0% 96.9%
2lrgA00 2.60.60.60 Mainly Beta › Sandwich › Lipoxygenase-1 › 0.53 33.0 2.48e-01 100.0% 24.6%
3ll3B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 45.0 2.92e-01 100.0% 31.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4384880 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.87 76.0 6.34e-01 96.1% 60.0%
2876 101.1.14.2 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.85 78.0 7.01e-01 100.0% 73.9%
4414927 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.80 71.0 6.43e-01 100.0% 75.4%
3587703 101.1.14.0 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.78 68.0 6.87e-01 100.0% 100.0%
3171408 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.76 64.0 6.52e-01 98.0% 100.0%
3720958 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.60 46.0 4.66e-01 96.1% 82.0%
3991455 822.2.1.1 ↗ a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK 0.60 41.0 4.06e-01 100.0% 67.3%
4943773 297.1.1.2 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Sua5_yciO_yrdC 0.60 51.0 3.44e-01 100.0% 82.3%
3949142 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 39.0 4.42e-01 100.0% 100.0%
3597842 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.53 40.0 3.94e-01 90.2% 98.3%
4023252 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 38.0 3.05e-01 86.3% 66.2%
3581875 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.52 43.0 2.63e-01 100.0% 54.7%
1873429 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.51 43.0 2.84e-01 100.0% 91.8%