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LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00281
Bact-VirLacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00281
Identity
- Kingdom:
- phage
Quality
74.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-82
Domain cluster:
rep: LacPavin_0818_WC55_scaffold_0-10091_curated_closed_complete_start-adj_prodigal-single.1__X__X__00278__D2-77
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7lt2A01 | 3.30.460.90 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.79 | 42.0 | 2.88e-01 | 72.4% | 16.3% |
| 1yn8A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.77 | 57.0 | 6.42e-01 | 85.5% | 100.0% |
| 4ntqA00 | 3.10.380.20 | Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Novel toxin 21 (CdiA), C-terminal domain | 0.77 | 41.0 | 4.19e-01 | 77.6% | 52.6% |
| 1x43A01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.76 | 57.0 | 6.21e-01 | 86.8% | 96.8% |
| 2rqtA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.72 | 54.0 | 5.93e-01 | 85.5% | 98.4% |
| 5o99A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.72 | 52.0 | 5.74e-01 | 85.5% | 95.0% |
| 7z0kB01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.72 | 55.0 | 5.97e-01 | 85.5% | 96.9% |
| 3g1jA00 | 2.30.30.350 | Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. | 0.71 | 56.0 | 5.29e-01 | 84.2% | 82.2% |
| 1tg0A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.71 | 55.0 | 5.85e-01 | 85.5% | 93.9% |
| 6vlfA03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.71 | 51.0 | 5.79e-01 | 84.2% | 100.0% |
| 2e5kA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.70 | 54.0 | 5.86e-01 | 85.5% | 98.4% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.70 | 53.0 | 5.76e-01 | 85.5% | 96.9% |
| 1wfwA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.69 | 55.0 | 5.58e-01 | 89.5% | 86.5% |
| 2fpeA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.69 | 52.0 | 5.71e-01 | 89.5% | 98.4% |
| 4krtB03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.68 | 53.0 | 5.58e-01 | 82.9% | 100.0% |
| 4dm5A00 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.68 | 44.0 | 4.28e-01 | 81.6% | 58.6% |
| 4tyzA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.67 | 50.0 | 4.52e-01 | 81.6% | 64.2% |
| 2ke9A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.67 | 54.0 | 5.73e-01 | 97.4% | 98.5% |
| 2kgtA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.66 | 51.0 | 5.21e-01 | 89.5% | 87.5% |
| 2eyqA05 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.65 | 45.0 | 4.96e-01 | 93.4% | 93.2% |
| 1bcoA02 | 2.30.30.130 | Mainly Beta › Roll › SH3 type barrels. › Transposase, Mu, C-terminal | 0.65 | 45.0 | 4.74e-01 | 71.1% | 100.0% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 46.0 | 4.91e-01 | 88.2% | 93.5% |
| 1dz1A00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.64 | 44.0 | 4.58e-01 | 72.4% | 81.4% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 46.0 | 4.80e-01 | 93.4% | 84.5% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.63 | 47.0 | 5.03e-01 | 86.8% | 98.4% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.62 | 46.0 | 4.67e-01 | 88.2% | 80.0% |
| 3u12A00 | 2.30.29.180 | Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain | 0.62 | 49.0 | 4.44e-01 | 86.8% | 78.8% |
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 45.0 | 4.66e-01 | 94.7% | 84.7% |
| 3pvlA04 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.60 | 49.0 | 4.56e-01 | 92.1% | 74.7% |
| 2lydA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 45.0 | 3.80e-01 | 86.8% | 62.7% |
| 7k7jA02 | 2.60.40.1770 | Mainly Beta › Sandwich › Immunoglobulin-like › ephrin a2 ectodomain | 0.56 | 34.0 | 3.69e-01 | 71.1% | 72.6% |
| 1a8dA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.56 | 43.0 | 3.27e-01 | 85.5% | 88.3% |
| 2epbA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 38.0 | 4.00e-01 | 71.1% | 86.8% |
| 3pvlA05 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 49.0 | 4.96e-01 | 97.4% | 100.0% |
| 1x6oA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 39.0 | 3.91e-01 | 76.3% | 96.2% |
| 1t4lB00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 37.0 | 3.57e-01 | 73.7% | 65.6% |
| 2oa9B02 | 3.30.70.3570 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain | 0.53 | 42.0 | 3.55e-01 | 85.5% | 78.7% |
| 5exvC00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.53 | 41.0 | 3.29e-01 | 86.8% | 78.8% |
| 1jb7A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 39.0 | 3.48e-01 | 82.9% | 80.2% |
| 3imoC00 | 3.30.920.70 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › | 0.52 | 34.0 | 3.12e-01 | 88.2% | 48.6% |
| 2l2fA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.52 | 37.0 | 3.40e-01 | 78.9% | 87.0% |
| 1b44D00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 40.0 | 3.66e-01 | 89.5% | 97.2% |
| 6jy5B00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.50 | 40.0 | 3.96e-01 | 88.2% | 100.0% |
ECOD (65)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3910727 | 4.1.1.353 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_TNRC18 | 0.78 | 53.0 | 5.74e-01 | 84.2% | 83.1% |
| 147681 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.76 | 56.0 | 6.11e-01 | 85.5% | 93.7% |
| 3995092 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.75 | 57.0 | 4.15e-01 | 85.5% | 30.5% |
| 3482676 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 56.0 | 6.23e-01 | 85.5% | 100.0% |
| 4003181 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.75 | 56.0 | 6.22e-01 | 82.9% | 100.0% |
| 3234923 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.74 | 56.0 | 6.15e-01 | 84.2% | 96.8% |
| 3579728 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.74 | 56.0 | 5.86e-01 | 85.5% | 87.1% |
| 3931417 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.74 | 56.0 | 6.19e-01 | 84.2% | 100.0% |
| 3224981 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.74 | 54.0 | 6.04e-01 | 89.5% | 98.3% |
| 4003123 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.74 | 56.0 | 6.02e-01 | 89.5% | 93.8% |
| 3211367 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.73 | 57.0 | 5.40e-01 | 89.5% | 70.0% |
| 3261986 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.73 | 54.0 | 6.02e-01 | 89.5% | 100.0% |
| 3498357 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.72 | 55.0 | 5.73e-01 | 89.5% | 87.1% |
| 3554995 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.72 | 54.0 | 5.64e-01 | 89.5% | 85.7% |
| 4134876 | 4.1.1.334 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 | 0.72 | 54.0 | 4.16e-01 | 89.5% | 36.4% |
| 3259841 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 58.0 | 6.01e-01 | 85.5% | 94.3% |
| 4878827 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.72 | 53.0 | 5.85e-01 | 85.5% | 96.8% |
| 3416133 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.71 | 54.0 | 5.50e-01 | 89.5% | 81.3% |
| 3783847 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.71 | 55.0 | 5.87e-01 | 85.5% | 95.4% |
| 3259043 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.71 | 53.0 | 5.56e-01 | 85.5% | 85.7% |
| 1144827 | 4.1.1.79 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3601 | 0.71 | 56.0 | 5.31e-01 | 84.2% | 83.1% |
| 3773104 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 56.0 | 4.60e-01 | 84.2% | 65.9% |
| 3710561 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.71 | 55.0 | 5.96e-01 | 84.2% | 96.9% |
| 3917464 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 53.0 | 5.73e-01 | 85.5% | 93.8% |
| 3473172 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 53.0 | 5.29e-01 | 85.5% | 77.5% |
| 3743973 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.70 | 55.0 | 5.43e-01 | 89.5% | 78.8% |
| 4218488 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.70 | 54.0 | 5.33e-01 | 85.5% | 77.5% |
| 3488995 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.70 | 54.0 | 5.78e-01 | 85.5% | 95.4% |
| 3999507 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 55.0 | 5.76e-01 | 85.5% | 91.4% |
| 3583296 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.70 | 57.0 | 5.90e-01 | 89.5% | 94.3% |
| 3396897 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.70 | 52.0 | 5.69e-01 | 84.2% | 95.2% |
| 3482680 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 55.0 | 5.93e-01 | 89.5% | 98.5% |
| 3936225 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 53.0 | 5.53e-01 | 88.2% | 87.1% |
| 3232165 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.69 | 54.0 | 5.09e-01 | 82.9% | 100.0% |
| 3766868 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.69 | 54.0 | 5.06e-01 | 86.8% | 68.9% |
| 3965976 | 809.1.1.1 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › SmpA_OmlA | 0.69 | 45.0 | 4.21e-01 | 80.3% | 54.3% |
| 4025829 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 47.0 | 5.31e-01 | 92.1% | 100.0% |
| 5051313 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 47.0 | 5.06e-01 | 85.5% | 84.6% |
| 3714926 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.69 | 38.0 | 4.60e-01 | 85.5% | 84.0% |
| 3938415 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.68 | 55.0 | 5.91e-01 | 89.5% | 100.0% |
| 3623785 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.68 | 53.0 | 5.40e-01 | 85.5% | 84.0% |
| 160765 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.68 | 55.0 | 5.51e-01 | 85.5% | 85.7% |
| 3509345 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.68 | 56.0 | 4.99e-01 | 96.1% | 63.8% |
| 3170649 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.68 | 53.0 | 5.14e-01 | 82.9% | 85.9% |
| 3743464 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.67 | 55.0 | 5.61e-01 | 89.5% | 89.3% |
| 3538030 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.67 | 51.0 | 5.30e-01 | 88.2% | 87.1% |
| 3787441 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.67 | 60.0 | 5.68e-01 | 100.0% | 83.3% |
| 4605602 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 50.0 | 5.28e-01 | 94.7% | 93.8% |
| 3939132 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.66 | 57.0 | 5.19e-01 | 98.7% | 71.0% |
| 3782313 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.66 | 54.0 | 5.44e-01 | 89.5% | 88.0% |
| 3503332 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 51.0 | 5.43e-01 | 81.6% | 100.0% |
| 3284258 | 222.1.1.1 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas | 0.66 | 45.0 | 3.78e-01 | 71.1% | 83.8% |
| 3570230 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.64 | 57.0 | 5.44e-01 | 100.0% | 94.4% |
| 4993396 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.63 | 50.0 | 3.43e-01 | 97.4% | 23.1% |
| 3602236 | 284.1.3.3 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › DUF4346 | 0.62 | 45.0 | 4.20e-01 | 86.8% | 61.1% |
| 4185893 | 4.1.1.394 ↗ | beta barrels › SH3 › SH3 › SH3 › SlpA | 0.62 | 47.0 | 5.09e-01 | 81.6% | 100.0% |
| 3257304 | 220.1.1.2 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 | 0.61 | 48.0 | 4.37e-01 | 86.8% | 78.1% |
| 3613178 | 220.1.1.11 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru | 0.58 | 47.0 | 3.94e-01 | 90.8% | 66.7% |
| 3702987 | 220.1.1.11 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru | 0.56 | 45.0 | 3.24e-01 | 90.8% | 36.7% |
| 3649418 | 2485.1.1.32 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Sep15_SelM | 0.56 | 44.0 | 4.11e-01 | 85.5% | 98.9% |
| 3975862 | 220.1.1.104 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Cpta_toxin | 0.54 | 35.0 | 3.47e-01 | 77.6% | 62.5% |
| 3253049 | 5.3.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II | 0.53 | 36.0 | 3.04e-01 | 71.1% | 99.3% |
| 3604410 | 2004.1.1.293 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 | 0.53 | 47.0 | 3.60e-01 | 100.0% | 83.3% |
| 3974132 | 4152.2.1.0 ↗ | a+b two layers › Shew3726-like › Uncharacterized protein CV_2116 › Uncharacterized protein CV_2116 | 0.52 | 39.0 | 3.94e-01 | 80.3% | 88.0% |
| 3589823 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.51 | 39.0 | 4.13e-01 | 98.7% | 95.4% |