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LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00008
Bact-VirLacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00008
Identity
- Kingdom:
- phage
Quality
67.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 626-736
Domain cluster:
rep: NC_007149.1__YP_249596.1__VVP4_p28__00028__D493-632
CATH (62)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qexA03 | 2.60.40.1680 | Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like | 0.83 | 77.0 | 7.66e-01 | 98.2% | 94.7% |
| 1uynX00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.68 | 59.0 | 4.31e-01 | 91.9% | 95.3% |
| 1lshA01 | 2.30.230.10 | Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A | 0.66 | 52.0 | 3.93e-01 | 83.8% | 93.5% |
| 3isrA02 | 2.60.40.2250 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 42.0 | 4.44e-01 | 99.1% | 73.0% |
| 6lofA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.64 | 52.0 | 4.58e-01 | 86.5% | 74.7% |
| 3bk5A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.64 | 51.0 | 3.97e-01 | 84.7% | 88.1% |
| 4e1sA00 | 2.40.160.160 | Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain | 0.64 | 51.0 | 3.88e-01 | 82.9% | 95.5% |
| 3hwjA00 | 2.60.120.820 | Mainly Beta › Sandwich › Jelly Rolls › PHR domain | 0.64 | 45.0 | 4.12e-01 | 100.0% | 55.0% |
| 2g16B00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.64 | 52.0 | 4.53e-01 | 86.5% | 74.8% |
| 1yllA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.62 | 41.0 | 4.52e-01 | 97.3% | 81.5% |
| 6wilA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.62 | 47.0 | 3.30e-01 | 79.3% | 68.9% |
| 4z48A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.62 | 50.0 | 3.86e-01 | 85.6% | 89.2% |
| 1uisA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.61 | 53.0 | 4.17e-01 | 92.8% | 55.8% |
| 2c9jA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.61 | 53.0 | 4.22e-01 | 92.8% | 59.2% |
| 4dkmA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.61 | 52.0 | 4.21e-01 | 92.8% | 59.6% |
| 2pslA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.61 | 52.0 | 4.18e-01 | 92.8% | 57.6% |
| 3oq3B03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 44.0 | 4.58e-01 | 98.2% | 83.5% |
| 2ichA01 | 2.40.370.10 | Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain | 0.59 | 47.0 | 4.05e-01 | 85.6% | 96.1% |
| 7mxdX01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 48.0 | 4.74e-01 | 97.3% | 83.2% |
| 2dd7A00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.59 | 51.0 | 4.08e-01 | 92.8% | 59.3% |
| 2q03A00 | 2.40.350.10 | Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like | 0.58 | 43.0 | 4.10e-01 | 77.5% | 93.2% |
| 8ornD01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.58 | 45.0 | 3.91e-01 | 82.9% | 94.3% |
| 2ww8A02 | 2.60.40.2110 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 48.0 | 4.00e-01 | 100.0% | 50.5% |
| 2df7A02 | 2.60.120.660 | Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus | 0.58 | 52.0 | 4.81e-01 | 100.0% | 90.7% |
| 7altB01 | 2.60.40.3510 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 42.0 | 3.76e-01 | 75.7% | 55.1% |
| 4gf4A00 | 2.40.160.180 | Mainly Beta › Beta Barrel › Porin › Carbohydrate-selective porin OprB | 0.58 | 42.0 | 3.03e-01 | 74.8% | 27.8% |
| 2ds4A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 41.0 | 4.28e-01 | 96.4% | 79.0% |
| 1iwmA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.57 | 45.0 | 3.86e-01 | 83.8% | 92.1% |
| 3ideA02 | 2.60.120.660 | Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus | 0.56 | 49.0 | 4.61e-01 | 100.0% | 94.4% |
| 1h4uA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.56 | 48.0 | 3.73e-01 | 92.8% | 52.2% |
| 1t3qB04 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.56 | 42.0 | 3.55e-01 | 80.2% | 83.0% |
| 5fq0A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 37.0 | 3.74e-01 | 97.3% | 67.3% |
| 2zf3C00 | 2.50.20.30 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.55 | 44.0 | 3.77e-01 | 85.6% | 92.9% |
| 3lwcA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 36.0 | 3.72e-01 | 97.3% | 69.9% |
| 2dibA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 40.0 | 4.19e-01 | 95.5% | 86.6% |
| 3sybA00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.55 | 46.0 | 3.20e-01 | 94.6% | 97.1% |
| 1x99A00 | 2.60.270.20 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin | 0.55 | 42.0 | 3.88e-01 | 82.0% | 95.2% |
| 1umzA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 48.0 | 3.71e-01 | 100.0% | 65.9% |
| 1uaiA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 48.0 | 3.87e-01 | 99.1% | 96.0% |
| 6ef7A00 | 2.60.40.4140 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 40.0 | 3.94e-01 | 99.1% | 71.0% |
| 3vgiA00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.54 | 47.0 | 3.65e-01 | 100.0% | 77.0% |
| 3ammA00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.54 | 47.0 | 3.70e-01 | 100.0% | 82.0% |
| 5e99H01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 46.0 | 4.04e-01 | 96.4% | 91.8% |
| 1fx3B00 | 3.10.420.10 | Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like | 0.53 | 41.0 | 3.75e-01 | 82.0% | 89.9% |
| 4ktpA01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.53 | 40.0 | 3.18e-01 | 81.1% | 53.2% |
| 2o8qA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 33.0 | 3.26e-01 | 98.2% | 56.6% |
| 4lr4A01 | 2.60.120.1420 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 43.0 | 3.76e-01 | 98.2% | 56.2% |
| 4ojdH01 | 2.60.98.60 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 | 0.53 | 45.0 | 4.01e-01 | 94.6% | 94.5% |
| 2zewB00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 46.0 | 4.25e-01 | 98.2% | 93.2% |
| 7alkA01 | 2.60.40.3510 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 38.0 | 3.42e-01 | 75.7% | 58.7% |
| 7q61A01 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 40.0 | 4.04e-01 | 99.1% | 82.6% |
| 2wkkA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 45.0 | 4.17e-01 | 98.2% | 84.0% |
| 5jqyA02 | 2.60.120.330 | Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain | 0.52 | 37.0 | 3.07e-01 | 100.0% | 41.3% |
| 8a28A02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 45.0 | 4.21e-01 | 97.3% | 75.4% |
| 5mw5A01 | 2.60.40.3510 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 37.0 | 3.43e-01 | 75.7% | 60.3% |
| 4llfD02 | 2.60.40.4030 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 45.0 | 4.47e-01 | 97.3% | 89.2% |
| 6fokB01 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.52 | 44.0 | 2.79e-01 | 95.5% | 99.1% |
| 4ph8A00 | 2.60.40.2910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 46.0 | 4.20e-01 | 100.0% | 80.0% |
| 5axgA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 40.0 | 3.88e-01 | 94.6% | 73.8% |
| 3sy9C01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.51 | 40.0 | 2.86e-01 | 84.7% | 58.4% |
| 4qpwA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 44.0 | 4.09e-01 | 96.4% | 95.8% |
| 2y7lA02 | 2.60.40.2430 | Mainly Beta › Sandwich › Immunoglobulin-like › Agglutinin-like protein, N-terminal domain, N2 subdomain | 0.51 | 44.0 | 4.07e-01 | 100.0% | 77.5% |
ECOD (65)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 441034 | 3386.1.1.4 ↗ | beta sandwiches › gp9 C-terminal domain-like › gp9 C-terminal domain-related › gp9 C-terminal domain-related › T4_gp9_10_C | 0.83 | 78.0 | 7.59e-01 | 100.0% | 91.7% |
| 2512673 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.77 | 62.0 | 5.93e-01 | 100.0% | 74.6% |
| 2581320 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.74 | 67.0 | 6.43e-01 | 98.2% | 92.8% |
| 4991099 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.69 | 43.0 | 4.70e-01 | 100.0% | 76.7% |
| 885 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.68 | 59.0 | 4.31e-01 | 91.9% | 95.3% |
| 3945018 | 5084.5.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD | 0.68 | 53.0 | 3.57e-01 | 82.0% | 99.2% |
| 5036836 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.67 | 54.0 | 4.19e-01 | 84.7% | 87.8% |
| 3386238 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.67 | 59.0 | 4.18e-01 | 93.7% | 95.9% |
| 4982181 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.67 | 40.0 | 3.39e-01 | 100.0% | 34.7% |
| 4937593 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.67 | 53.0 | 4.20e-01 | 83.8% | 94.0% |
| 4630707 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.66 | 41.0 | 4.19e-01 | 99.1% | 62.7% |
| 2373 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.66 | 53.0 | 3.94e-01 | 84.7% | 92.2% |
| 3952986 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.66 | 51.0 | 4.95e-01 | 80.2% | 100.0% |
| 4191031 | 5084.3.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter | 0.64 | 55.0 | 3.98e-01 | 92.8% | 95.5% |
| 3220160 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 47.0 | 4.37e-01 | 79.3% | 100.0% |
| 3062826 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.62 | 54.0 | 4.19e-01 | 92.8% | 55.6% |
| 4038477 | 5084.3.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › PF29188 | 0.62 | 53.0 | 3.83e-01 | 91.9% | 95.2% |
| 4603160 | 5084.5.4.4 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › YaiO | 0.62 | 48.0 | 3.72e-01 | 81.1% | 100.0% |
| 1720440 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.62 | 54.0 | 4.21e-01 | 93.7% | 54.5% |
| 3962617 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.62 | 50.0 | 4.10e-01 | 100.0% | 46.8% |
| 1548777 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.62 | 50.0 | 3.86e-01 | 85.6% | 89.2% |
| 4512746 | 5084.1.1.9 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PagL | 0.62 | 48.0 | 4.25e-01 | 82.0% | 98.1% |
| 4113088 | 5084.1.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OmpA_membrane | 0.62 | 47.0 | 3.94e-01 | 82.9% | 97.0% |
| 3366806 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.61 | 44.0 | 3.44e-01 | 75.7% | 60.8% |
| 28728 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.61 | 52.0 | 4.21e-01 | 92.8% | 59.0% |
| 3648714 | 11.2.1.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 | 0.61 | 44.0 | 4.13e-01 | 74.8% | 76.9% |
| 3964096 | 5084.1.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity | 0.61 | 47.0 | 4.04e-01 | 82.0% | 88.6% |
| 5017990 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 43.0 | 4.36e-01 | 74.8% | 99.1% |
| 3879988 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.59 | 48.0 | 3.87e-01 | 100.0% | 45.6% |
| 4005087 | 5084.5.1.8 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM | 0.59 | 47.0 | 3.70e-01 | 84.7% | 70.4% |
| 5014023 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.58 | 48.0 | 4.01e-01 | 86.5% | 90.8% |
| 5063640 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.58 | 45.0 | 4.87e-01 | 98.2% | 100.0% |
| 3705932 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 46.0 | 3.16e-01 | 84.7% | 94.9% |
| 4022742 | 3385.1.1.0 ↗ | beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 | 0.57 | 39.0 | 3.56e-01 | 70.3% | 83.2% |
| 3938814 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.56 | 41.0 | 4.15e-01 | 98.2% | 76.4% |
| 4992294 | 10.1.1.117 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin | 0.56 | 49.0 | 3.86e-01 | 100.0% | 73.6% |
| 4248693 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.56 | 48.0 | 4.11e-01 | 96.4% | 95.7% |
| 3849839 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.55 | 40.0 | 4.20e-01 | 74.8% | 100.0% |
| 3798012 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.55 | 50.0 | 3.80e-01 | 100.0% | 74.9% |
| 3227760 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.54 | 50.0 | 3.76e-01 | 100.0% | 72.7% |
| 3806972 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.54 | 44.0 | 3.19e-01 | 93.7% | 54.3% |
| 3801065 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.53 | 49.0 | 3.68e-01 | 100.0% | 70.0% |
| 3715939 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.53 | 43.0 | 3.48e-01 | 98.2% | 46.3% |
| 3996785 | 11.1.1.53 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON | 0.53 | 45.0 | 4.07e-01 | 96.4% | 75.0% |
| 3879968 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.53 | 49.0 | 3.81e-01 | 100.0% | 77.4% |
| 3621385 | 883.1.1.15 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C | 0.53 | 49.0 | 3.21e-01 | 100.0% | 37.3% |
| 3628420 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.53 | 48.0 | 3.74e-01 | 100.0% | 75.4% |
| 3627653 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.52 | 47.0 | 3.12e-01 | 100.0% | 36.6% |
| 3974058 | 5084.5.1.28 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › CopB | 0.52 | 43.0 | 3.53e-01 | 90.1% | 93.8% |
| 1112109 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.52 | 47.0 | 3.74e-01 | 100.0% | 77.5% |
| 3936894 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.52 | 47.0 | 3.72e-01 | 100.0% | 79.6% |
| 3811679 | 10.1.1.58 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neprosin | 0.52 | 43.0 | 3.16e-01 | 92.8% | 60.8% |
| 5032376 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 41.0 | 3.18e-01 | 89.2% | 85.7% |
| 3352288 | 10.1.1.12 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16,XET_C | 0.52 | 45.0 | 3.41e-01 | 100.0% | 50.8% |
| 3219928 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.52 | 47.0 | 3.58e-01 | 100.0% | 69.8% |
| 3677814 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.52 | 47.0 | 3.61e-01 | 100.0% | 74.2% |
| 3293359 | 10.32.1.33 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CIA30 | 0.51 | 44.0 | 3.67e-01 | 97.3% | 72.7% |
| 3281898 | 12.3.1.8 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N | 0.51 | 38.0 | 2.96e-01 | 80.2% | 52.7% |
| 3222982 | 11.1.1.53 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON | 0.51 | 44.0 | 4.06e-01 | 98.2% | 82.0% |
| 3581299 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.51 | 46.0 | 3.61e-01 | 100.0% | 77.4% |
| 3226243 | 10.32.1.218 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7154 | 0.51 | 44.0 | 4.42e-01 | 96.4% | 93.0% |
| 3807290 | 10.1.1.58 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neprosin | 0.51 | 42.0 | 3.13e-01 | 92.8% | 66.6% |
| 3836667 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.50 | 46.0 | 3.65e-01 | 100.0% | 73.3% |
| 3811267 | 10.1.1.58 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neprosin | 0.50 | 42.0 | 3.35e-01 | 93.7% | 80.8% |
| 3293710 | 10.1.1.58 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neprosin | 0.50 | 41.0 | 3.25e-01 | 92.8% | 78.8% |
D2
medium
residues 1-145
D3
medium
residues 448-620
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4i84A00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.85 | 75.0 | 6.10e-01 | 91.9% | 84.8% |
| 2odlA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.81 | 77.0 | 5.82e-01 | 100.0% | 81.5% |
| 1gq8A00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.75 | 69.0 | 5.61e-01 | 100.0% | 83.6% |
| 4oj5C04 | 2.160.20.130 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.63 | 56.0 | 5.53e-01 | 96.0% | 95.7% |
| 4w8qA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.62 | 57.0 | 5.10e-01 | 97.7% | 100.0% |
| 3bh7B01 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.61 | 53.0 | 5.12e-01 | 92.5% | 100.0% |
| 2yuhA01 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.57 | 49.0 | 5.00e-01 | 94.2% | 94.2% |
| 4v02C00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.56 | 38.0 | 4.45e-01 | 78.0% | 97.5% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4971789 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.94 | 69.0 | 8.02e-01 | 80.3% | 100.0% |
| 4026564 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.90 | 84.0 | 8.05e-01 | 99.4% | 86.2% |
| 3800711 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.89 | 75.0 | 8.08e-01 | 89.6% | 100.0% |
| 5007613 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.87 | 62.0 | 7.21e-01 | 76.9% | 97.7% |
| 5050663 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.86 | 83.0 | 7.36e-01 | 100.0% | 80.7% |
| 4025775 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.86 | 57.0 | 6.94e-01 | 78.6% | 100.0% |
| 5026672 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.85 | 82.0 | 6.43e-01 | 100.0% | 54.2% |
| 4951076 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.84 | 64.0 | 7.29e-01 | 82.7% | 100.0% |
| 4307386 | 207.6.1.16 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › FARP | 0.83 | 76.0 | 7.44e-01 | 100.0% | 89.2% |
| 5005047 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.83 | 65.0 | 7.23e-01 | 89.0% | 100.0% |
| 4463206 | 208.1.1.45 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Bactofilin | 0.82 | 78.0 | 7.00e-01 | 100.0% | 88.7% |
| 3711105 | 208.7.1.6 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein › Nucleoporin_FG | 0.81 | 61.0 | 6.50e-01 | 98.8% | 88.7% |
| 3305986 | 208.7.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein | 0.80 | 53.0 | 6.43e-01 | 82.7% | 100.0% |
| 3862265 | 207.9.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats | 0.80 | 75.0 | 4.92e-01 | 100.0% | 30.4% |
| 3699483 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.80 | 74.0 | 5.56e-01 | 99.4% | 53.3% |
| 3937756 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.77 | 72.0 | 6.43e-01 | 100.0% | 74.9% |
| 3513692 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.76 | 71.0 | 5.77e-01 | 100.0% | 55.7% |
| 4932011 | 207.14.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin | 0.76 | 49.0 | 5.91e-01 | 83.8% | 97.4% |
| 3884895 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.74 | 69.0 | 6.34e-01 | 99.4% | 88.6% |
| 3391275 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.74 | 45.0 | 5.64e-01 | 98.3% | 100.0% |
| 4561172 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.73 | 61.0 | 5.67e-01 | 100.0% | 71.0% |
| 4406918 | 207.6.1.16 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › FARP | 0.73 | 54.0 | 6.11e-01 | 84.4% | 100.0% |
| 3758283 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.72 | 59.0 | 5.94e-01 | 85.5% | 100.0% |
| 3937084 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.72 | 63.0 | 5.83e-01 | 100.0% | 74.2% |
| 3605595 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.70 | 54.0 | 5.31e-01 | 100.0% | 75.6% |
| 4995410 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.67 | 60.0 | 4.87e-01 | 97.7% | 83.1% |
| 3187916 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.64 | 59.0 | 5.42e-01 | 100.0% | 90.0% |
| 3517885 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.63 | 56.0 | 5.58e-01 | 92.5% | 92.8% |