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LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00019
Bact-VirLacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00019
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-156
Domain cluster:
rep: JQ067093.2__ALH23509.1__PaMx74_36__00036__D1104-1231
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00754.32 best | F5_F8_type_C | 38.0 | 2.40e-09 | 70.7% | 73.2% |
| PF22633.4 | F5_F8_type_C_2 | 32.8 | 1.20e-07 | 59.3% | 92.2% |
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x5aA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 36.0 | 4.23e-01 | 100.0% | 82.4% |
| 1uctA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 31.0 | 3.75e-01 | 92.9% | 71.4% |
| 2ee3A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 35.0 | 3.93e-01 | 79.3% | 73.1% |
| 4aefA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 33.0 | 3.88e-01 | 100.0% | 77.9% |
| 3d30A02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.59 | 35.0 | 4.07e-01 | 86.4% | 85.1% |
| 2vn4A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 38.0 | 4.14e-01 | 100.0% | 79.8% |
| 1f97A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 33.0 | 3.72e-01 | 96.4% | 74.3% |
| 1wf5A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 36.0 | 3.82e-01 | 77.9% | 71.9% |
| 6fhvA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 37.0 | 4.23e-01 | 100.0% | 92.9% |
| 2zotC00 | 2.60.40.4060 | Mainly Beta › Sandwich › Immunoglobulin-like › Reeler domain | 0.56 | 42.0 | 4.23e-01 | 100.0% | 77.9% |
| 2ww8A05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 41.0 | 4.33e-01 | 90.7% | 87.0% |
| 2m2dA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 36.0 | 3.85e-01 | 93.6% | 75.4% |
| 2a5zA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 40.0 | 3.41e-01 | 75.0% | 62.8% |
| 4b60A02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 45.0 | 4.34e-01 | 90.0% | 78.2% |
| 1uwyA02 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.54 | 34.0 | 3.87e-01 | 90.0% | 87.6% |
| 3kb5A00 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.53 | 39.0 | 3.58e-01 | 78.6% | 81.3% |
| 2x5pA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 36.0 | 4.04e-01 | 95.7% | 98.1% |
| 8bs9A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 38.0 | 3.02e-01 | 79.3% | 60.3% |
| 4bzyA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 32.0 | 3.57e-01 | 92.1% | 79.6% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2324084 | 10.32.1.2 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C | 0.89 | 71.0 | 6.64e-01 | 82.1% | 75.2% |
| 3594435 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.81 | 76.0 | 6.58e-01 | 100.0% | 97.6% |
| 3904915 | 10.32.1.105 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4457 | 0.81 | 77.0 | 7.11e-01 | 100.0% | 92.9% |
| 3235471 | 10.32.1.105 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4457 | 0.79 | 75.0 | 7.31e-01 | 100.0% | 98.7% |
| 3262524 | 10.10.1.6 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › DUF4457 | 0.76 | 53.0 | 6.19e-01 | 95.7% | 100.0% |
| 3872820 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 34.0 | 4.14e-01 | 99.3% | 78.9% |
| 3175229 | 11.1.1.1099 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28268 | 0.62 | 34.0 | 4.19e-01 | 100.0% | 84.4% |
| 3221924 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.61 | 36.0 | 3.73e-01 | 100.0% | 61.2% |
| 1117 | 10.1.1.52 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SO2946-like_C | 0.56 | 40.0 | 3.41e-01 | 75.0% | 62.8% |
| 3906392 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.56 | 38.0 | 3.95e-01 | 90.0% | 74.6% |
| 3223711 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.54 | 37.0 | 3.55e-01 | 70.7% | 72.9% |
| 3278330 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.53 | 39.0 | 4.22e-01 | 89.3% | 93.0% |
| 2474168 | 10.1.1.41 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 | 0.53 | 38.0 | 3.44e-01 | 75.7% | 64.5% |
| 3729566 | 10.18.1.3 ↗ | beta sandwiches › jelly-roll › VPA0735-like › VPA0735-like › DUF1214, DUF1254 | 0.53 | 40.0 | 2.81e-01 | 79.3% | 28.3% |