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LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00035
Bact-VirLacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00035
Identity
- Kingdom:
- phage
Quality
92.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-70
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kk7A01 | 3.30.420.400 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.59 | 50.0 | 4.25e-01 | 92.6% | 80.7% |
| 2y6uA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 49.0 | 3.17e-01 | 100.0% | 43.3% |
| 3lv0A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.57 | 44.0 | 3.57e-01 | 100.0% | 42.4% |
| 3qmfA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.55 | 43.0 | 3.52e-01 | 100.0% | 44.0% |
| 2q74A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.53 | 42.0 | 3.54e-01 | 100.0% | 48.1% |
| 3a0oA03 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.52 | 43.0 | 2.98e-01 | 100.0% | 83.3% |
| 1r8oB01 | 2.30.30.480 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 33.0 | 3.34e-01 | 91.2% | 66.7% |
| 4oddA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 40.0 | 3.24e-01 | 100.0% | 43.0% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3352340 | 375.1.1.210 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF30904 | 0.69 | 52.0 | 5.74e-01 | 92.6% | 100.0% |
| 4287721 | 375.1.1.3 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L33 | 0.62 | 46.0 | 4.81e-01 | 86.8% | 95.0% |
| 5051542 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.61 | 49.0 | 3.61e-01 | 95.6% | 32.1% |
| 3726266 | 3363.1.1.0 ↗ | beta sandwiches › avirulence protein AvrPiz-t homologs › avirulence protein AvrPiz-t homologs › avirulence protein AvrPiz-t homologs | 0.53 | 44.0 | 4.09e-01 | 95.6% | 78.9% |
| 4221174 | 243.19.1.0 ↗ | a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains | 0.53 | 44.0 | 4.07e-01 | 98.5% | 98.9% |
| 5072220 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.53 | 42.0 | 3.41e-01 | 100.0% | 42.8% |
| 4952074 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.53 | 38.0 | 2.98e-01 | 88.2% | 35.3% |
| 5082792 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.52 | 44.0 | 3.49e-01 | 100.0% | 45.5% |
| 3488451 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 42.0 | 2.69e-01 | 100.0% | 49.2% |
| 5057420 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.50 | 43.0 | 2.89e-01 | 100.0% | 52.7% |
| 4003142 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.50 | 42.0 | 2.99e-01 | 100.0% | 47.6% |
D2
high
residues 77-148
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ikcA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.70 | 42.0 | 2.82e-01 | 70.8% | 15.7% |
| 2shpB03 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.69 | 43.0 | 2.84e-01 | 72.2% | 16.2% |
| 6hmjA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.62 | 50.0 | 4.52e-01 | 91.7% | 90.5% |
| 3a0oA03 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.61 | 41.0 | 2.81e-01 | 70.8% | 48.4% |
| 4kqdB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.60 | 49.0 | 4.26e-01 | 91.7% | 75.0% |
| 2basA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 44.0 | 3.84e-01 | 87.5% | 70.7% |
| 3u2aA00 | 3.30.450.310 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.55 | 44.0 | 3.88e-01 | 91.7% | 78.6% |
| 7prrB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 45.0 | 3.52e-01 | 94.4% | 67.5% |
| 3askA02 | 2.30.30.1150 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 38.0 | 2.98e-01 | 72.2% | 36.4% |
| 2efiA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 34.0 | 3.08e-01 | 70.8% | 47.0% |
| 4esqA00 | 3.40.1000.70 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain | 0.53 | 41.0 | 3.14e-01 | 88.9% | 37.6% |
| 2xepB01 | 3.10.450.280 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 45.0 | 3.95e-01 | 98.6% | 86.0% |
| 4qa8A00 | 2.50.20.20 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.52 | 36.0 | 2.68e-01 | 73.6% | 26.7% |
| 2k3dA00 | 3.10.450.130 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › folded 79 residue fragment of lin0334 like domains | 0.52 | 40.0 | 3.77e-01 | 94.4% | 69.0% |
| 3fkaB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 44.0 | 3.77e-01 | 98.6% | 79.2% |
| 2k54A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 43.0 | 3.71e-01 | 100.0% | 78.9% |
| 5evhA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 43.0 | 3.76e-01 | 100.0% | 76.0% |
| 1yq2A05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 42.0 | 2.85e-01 | 95.8% | 42.0% |
| 3bk5A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.51 | 42.0 | 3.09e-01 | 100.0% | 83.8% |
| 2g30A02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.51 | 38.0 | 3.36e-01 | 87.5% | 52.6% |
| 4l1nA00 | 2.40.128.660 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 | 0.50 | 46.0 | 3.50e-01 | 100.0% | 70.8% |
| 3en8A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 43.0 | 3.79e-01 | 100.0% | 81.2% |
| 4orlA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 40.0 | 3.53e-01 | 90.3% | 96.4% |
| 3blzA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 42.0 | 3.64e-01 | 100.0% | 81.5% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3221683 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.73 | 45.0 | 3.70e-01 | 75.0% | 34.6% |
| 3223473 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.73 | 45.0 | 3.74e-01 | 75.0% | 36.0% |
| 3240153 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.72 | 45.0 | 3.72e-01 | 75.0% | 36.0% |
| 3225961 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.69 | 43.0 | 3.52e-01 | 75.0% | 34.6% |
| 3213637 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.68 | 43.0 | 3.55e-01 | 75.0% | 35.4% |
| 3231376 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.67 | 42.0 | 3.45e-01 | 75.0% | 34.6% |
| 3530304 | 2004.1.1.174 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Elong_Iki1 | 0.67 | 40.0 | 2.84e-01 | 70.8% | 18.7% |
| 3213551 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.67 | 42.0 | 3.54e-01 | 75.0% | 36.8% |
| 3216475 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.66 | 42.0 | 3.53e-01 | 76.4% | 37.6% |
| 3945218 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.64 | 53.0 | 4.52e-01 | 90.3% | 81.7% |
| 4940463 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.63 | 45.0 | 3.72e-01 | 76.4% | 77.8% |
| 3215228 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.63 | 40.0 | 3.44e-01 | 76.4% | 39.2% |
| 3223598 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.63 | 40.0 | 3.28e-01 | 76.4% | 33.6% |
| 3221414 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.61 | 50.0 | 3.17e-01 | 90.3% | 97.5% |
| 4959121 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.60 | 49.0 | 4.24e-01 | 91.7% | 81.7% |
| 4975421 | 304.135.1.0 ↗ | a+b two layers › Alpha-beta plaits › O-phosphoseryl-tRNA synthetase C-terminal domain › O-phosphoseryl-tRNA synthetase C-terminal domain | 0.60 | 43.0 | 3.25e-01 | 76.4% | 87.8% |
| 4947040 | 304.135.1.0 ↗ | a+b two layers › Alpha-beta plaits › O-phosphoseryl-tRNA synthetase C-terminal domain › O-phosphoseryl-tRNA synthetase C-terminal domain | 0.58 | 43.0 | 3.36e-01 | 81.9% | 93.7% |
| 3694880 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.58 | 44.0 | 3.52e-01 | 88.9% | 40.7% |
| 4433785 | 283.2.1.4 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GP46 | 0.58 | 45.0 | 3.80e-01 | 87.5% | 84.6% |
| 5023841 | 304.135.1.0 ↗ | a+b two layers › Alpha-beta plaits › O-phosphoseryl-tRNA synthetase C-terminal domain › O-phosphoseryl-tRNA synthetase C-terminal domain | 0.58 | 43.0 | 3.31e-01 | 81.9% | 93.9% |
| 4504115 | 304.135.1.1 ↗ | a+b two layers › Alpha-beta plaits › O-phosphoseryl-tRNA synthetase C-terminal domain › O-phosphoseryl-tRNA synthetase C-terminal domain › SepRS_C | 0.57 | 44.0 | 3.37e-01 | 86.1% | 93.3% |
| 5055863 | 304.135.1.0 ↗ | a+b two layers › Alpha-beta plaits › O-phosphoseryl-tRNA synthetase C-terminal domain › O-phosphoseryl-tRNA synthetase C-terminal domain | 0.57 | 44.0 | 3.39e-01 | 87.5% | 93.9% |
| 4256382 | 881.5.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Respiratory growth induced protein 1 › Respiratory growth induced protein 1 › RGI1 | 0.56 | 46.0 | 3.74e-01 | 93.1% | 58.6% |
| 1833001 | 304.135.1.1 ↗ | a+b two layers › Alpha-beta plaits › O-phosphoseryl-tRNA synthetase C-terminal domain › O-phosphoseryl-tRNA synthetase C-terminal domain › SepRS_C | 0.56 | 43.0 | 3.35e-01 | 87.5% | 91.6% |
| 4959145 | 304.135.1.1 ↗ | a+b two layers › Alpha-beta plaits › O-phosphoseryl-tRNA synthetase C-terminal domain › O-phosphoseryl-tRNA synthetase C-terminal domain › SepRS_C | 0.55 | 41.0 | 3.21e-01 | 81.9% | 94.7% |
| 4972863 | 304.135.1.0 ↗ | a+b two layers › Alpha-beta plaits › O-phosphoseryl-tRNA synthetase C-terminal domain › O-phosphoseryl-tRNA synthetase C-terminal domain | 0.54 | 41.0 | 3.21e-01 | 83.3% | 94.1% |
| 3212496 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.54 | 43.0 | 4.07e-01 | 88.9% | 90.0% |
| 4935498 | 304.135.1.0 ↗ | a+b two layers › Alpha-beta plaits › O-phosphoseryl-tRNA synthetase C-terminal domain › O-phosphoseryl-tRNA synthetase C-terminal domain | 0.54 | 45.0 | 3.37e-01 | 91.7% | 95.6% |
| 4447649 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.54 | 45.0 | 3.31e-01 | 100.0% | 85.5% |
| 3812766 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.53 | 36.0 | 3.73e-01 | 70.8% | 80.0% |
| 2605239 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.53 | 44.0 | 3.77e-01 | 93.1% | 82.5% |
| 3980722 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.53 | 43.0 | 3.64e-01 | 94.4% | 69.2% |
| 3439826 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.53 | 41.0 | 3.39e-01 | 90.3% | 45.3% |
| 3981113 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.53 | 37.0 | 3.36e-01 | 76.4% | 69.7% |
| 4421841 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 43.0 | 2.98e-01 | 95.8% | 25.4% |
| 5056886 | 219.1.1.51 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 | 0.52 | 41.0 | 3.09e-01 | 90.3% | 81.5% |
| 3224595 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.51 | 37.0 | 3.61e-01 | 83.3% | 68.8% |
| 4962757 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 41.0 | 3.43e-01 | 94.4% | 51.4% |
| 3291744 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.51 | 29.0 | 2.84e-01 | 72.2% | 47.5% |
| 4991490 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.50 | 38.0 | 3.98e-01 | 93.1% | 95.4% |
| 3502940 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.50 | 39.0 | 3.55e-01 | 86.1% | 69.0% |
| 4405469 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.50 | 34.0 | 3.13e-01 | 70.8% | 58.9% |
| 2605238 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.50 | 41.0 | 3.71e-01 | 95.8% | 85.0% |