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LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00037
Bact-VirLacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00037
Identity
- Kingdom:
- phage
Quality
93.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-77
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3njaA02 | 2.10.70.100 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.71 | 43.0 | 5.20e-01 | 98.7% | 100.0% |
| 2enqA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.67 | 52.0 | 4.03e-01 | 81.6% | 82.9% |
| 1v3eA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.66 | 54.0 | 3.39e-01 | 89.5% | 89.3% |
| 1e8uA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.64 | 53.0 | 3.28e-01 | 90.8% | 89.7% |
| 5jenA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.62 | 38.0 | 3.37e-01 | 100.0% | 42.3% |
| 4iu2B01 | 2.60.40.3810 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 50.0 | 4.44e-01 | 92.1% | 94.0% |
| 2oq8A00 | 2.60.40.2930 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 54.0 | 4.35e-01 | 100.0% | 69.3% |
| 4e72A01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.61 | 38.0 | 3.27e-01 | 100.0% | 39.5% |
| 3cygA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.59 | 37.0 | 3.23e-01 | 100.0% | 40.3% |
| 1a0sP00 | 2.40.170.10 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type | 0.58 | 44.0 | 2.80e-01 | 81.6% | 99.8% |
| 6kjuB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 36.0 | 3.10e-01 | 100.0% | 40.2% |
| 1ntyA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 45.0 | 3.86e-01 | 88.2% | 66.1% |
| 3h51A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 38.0 | 3.09e-01 | 100.0% | 37.3% |
| 3vhxF00 | 2.60.40.4330 | Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain | 0.56 | 51.0 | 4.60e-01 | 98.7% | 94.1% |
| 6qj2A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 44.0 | 2.86e-01 | 86.8% | 94.9% |
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.54 | 48.0 | 4.26e-01 | 100.0% | 82.4% |
| 2n8xA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.54 | 40.0 | 3.21e-01 | 80.3% | 43.4% |
| 3ewkA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 34.0 | 3.17e-01 | 100.0% | 46.6% |
| 1yliB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 44.0 | 3.53e-01 | 88.2% | 49.3% |
| 4eg9A00 | 2.50.20.40 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.52 | 41.0 | 3.01e-01 | 88.2% | 72.7% |
| 5da9A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 42.0 | 2.75e-01 | 90.8% | 68.6% |
| 1pn2B01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 35.0 | 2.90e-01 | 85.5% | 36.5% |
| 3lydA01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.52 | 34.0 | 2.84e-01 | 78.9% | 36.6% |
| 1fx3B00 | 3.10.420.10 | Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like | 0.51 | 40.0 | 3.35e-01 | 90.8% | 74.5% |
| 3cqnB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 44.0 | 3.42e-01 | 94.7% | 71.4% |
| 1uynX00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.51 | 42.0 | 2.93e-01 | 94.7% | 85.3% |
| 4gn2A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.50 | 37.0 | 2.57e-01 | 77.6% | 24.6% |
| 3iq2A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.50 | 37.0 | 3.22e-01 | 80.3% | 62.6% |
| 5bkaE01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 38.0 | 3.29e-01 | 100.0% | 49.2% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3368394 | 4325.1.1.11 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF27041 | 0.78 | 46.0 | 4.23e-01 | 76.3% | 47.4% |
| 4995161 | 7504.1.1.2 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › NTPase_I-T | 0.74 | 50.0 | 3.81e-01 | 80.3% | 31.2% |
| 3685936 | 11.1.1.150 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Velvet | 0.74 | 54.0 | 3.98e-01 | 76.3% | 56.3% |
| 3834402 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.72 | 55.0 | 3.56e-01 | 81.6% | 34.6% |
| 2541822 | 5.1.3.5 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN | 0.71 | 54.0 | 4.06e-01 | 81.6% | 64.4% |
| 397995 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.71 | 44.0 | 3.91e-01 | 100.0% | 43.5% |
| 3665166 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.70 | 52.0 | 3.43e-01 | 78.9% | 25.4% |
| 3827703 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.69 | 50.0 | 3.29e-01 | 80.3% | 18.7% |
| 3805299 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.69 | 55.0 | 3.58e-01 | 84.2% | 33.0% |
| 4926802 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 48.0 | 3.51e-01 | 77.6% | 28.2% |
| None | — | 0.68 | 53.0 | 3.75e-01 | 82.9% | 44.4% | |
| 3802164 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.68 | 53.0 | 3.39e-01 | 81.6% | 31.7% |
| 4309111 | 4321.1.1.3 ↗ | a+b two layers › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › PgdA_N | 0.67 | 47.0 | 3.38e-01 | 100.0% | 24.9% |
| 3062081 | 5.1.3.5 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN | 0.66 | 54.0 | 3.36e-01 | 89.5% | 88.3% |
| 3781730 | 5.1.11.3 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Utp8_b_propeller | 0.66 | 54.0 | 3.45e-01 | 89.5% | 64.3% |
| 4989239 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.64 | 40.0 | 3.60e-01 | 98.7% | 43.6% |
| 3934526 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.64 | 47.0 | 3.66e-01 | 78.9% | 74.7% |
| 3607858 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.63 | 42.0 | 3.77e-01 | 97.4% | 49.5% |
| 3816372 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.62 | 55.0 | 3.69e-01 | 94.7% | 48.5% |
| 4951491 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.61 | 43.0 | 3.72e-01 | 100.0% | 46.7% |
| 4980686 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.61 | 38.0 | 3.40e-01 | 100.0% | 42.7% |
| 150490 | 3123.1.1.1 ↗ | a+b two layers › Nuclease AFV1-157 › Nuclease AFV1-157 › Nuclease AFV1-157 › DUF3258 | 0.60 | 53.0 | 4.27e-01 | 100.0% | 98.7% |
| 1883638 | 504.1.1.1 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB | 0.60 | 43.0 | 3.44e-01 | 80.3% | 37.4% |
| 4985492 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.59 | 50.0 | 3.47e-01 | 94.7% | 92.6% |
| 4960416 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 44.0 | 4.14e-01 | 77.6% | 87.6% |
| 2440125 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.58 | 36.0 | 3.09e-01 | 100.0% | 38.5% |
| 1822898 | 2004.1.1.199 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B | 0.58 | 38.0 | 2.98e-01 | 77.6% | 28.5% |
| 4997159 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.58 | 41.0 | 3.35e-01 | 77.6% | 39.3% |
| 5002290 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.58 | 37.0 | 3.14e-01 | 100.0% | 36.3% |
| 3631839 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.58 | 39.0 | 2.51e-01 | 82.9% | 13.9% |
| 3971184 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.57 | 38.0 | 3.17e-01 | 75.0% | 37.1% |
| 3226077 | 2484.1.1.50 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT | 0.57 | 46.0 | 2.88e-01 | 89.5% | 34.4% |
| 4037556 | 504.1.1.1 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB | 0.57 | 43.0 | 3.61e-01 | 82.9% | 72.9% |
| 3285746 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.57 | 43.0 | 3.43e-01 | 97.4% | 40.0% |
| 3609230 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.57 | 50.0 | 4.00e-01 | 96.1% | 82.8% |
| 5053533 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.57 | 39.0 | 3.08e-01 | 72.4% | 33.3% |
| 4351646 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.56 | 41.0 | 3.14e-01 | 93.4% | 32.4% |
| 4956937 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.56 | 42.0 | 2.74e-01 | 80.3% | 49.7% |
| 4966094 | 11.1.1.1428 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7846 | 0.56 | 40.0 | 2.99e-01 | 98.7% | 28.5% |
| 3444588 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.56 | 38.0 | 2.50e-01 | 80.3% | 14.8% |
| 3525853 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.56 | 44.0 | 3.60e-01 | 100.0% | 44.7% |
| 134734 | 243.1.1.13 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › CaMKII_AD | 0.56 | 38.0 | 3.09e-01 | 100.0% | 37.3% |
| 185601 | 7505.1.1.1 ↗ | a/b three-layered sandwiches › Kinesin-like protein KIF23 C-terminal domain › Kinesin-like protein KIF23 C-terminal domain › Kinesin-like protein KIF23 C-terminal domain › MKLP1_Arf_bdg | 0.56 | 51.0 | 4.48e-01 | 97.4% | 86.8% |
| 3602859 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 40.0 | 3.80e-01 | 76.3% | 83.3% |
| 3823073 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.55 | 48.0 | 3.14e-01 | 97.4% | 43.4% |
| 3725346 | 243.1.1.25 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 | 0.55 | 42.0 | 3.53e-01 | 100.0% | 47.7% |
| 4950971 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.55 | 41.0 | 2.76e-01 | 81.6% | 23.9% |
| 3421242 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 46.0 | 2.79e-01 | 92.1% | 81.3% |
| 5037096 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 40.0 | 2.91e-01 | 82.9% | 27.3% |
| 3387730 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.54 | 44.0 | 3.70e-01 | 94.7% | 51.1% |
| 4981268 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.53 | 42.0 | 2.98e-01 | 97.4% | 25.8% |
| 3604380 | 504.1.1.1 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB | 0.52 | 42.0 | 3.47e-01 | 89.5% | 75.9% |
| 5078872 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.52 | 45.0 | 3.08e-01 | 97.4% | 30.4% |
| 3286818 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.51 | 39.0 | 3.44e-01 | 100.0% | 51.9% |
| 3268736 | 2004.1.1.433 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 | 0.51 | 41.0 | 2.54e-01 | 90.8% | 77.2% |
| 3341415 | 11.1.5.80 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › TRAP_beta | 0.51 | 44.0 | 3.55e-01 | 97.4% | 77.2% |