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LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00039
Bact-VirLacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00039
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 37-142
Domain cluster:
rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6o38A04 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.79 | 62.0 | 6.69e-01 | 94.3% | 97.8% |
| 6o38A01 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.76 | 62.0 | 6.61e-01 | 91.5% | 98.9% |
| 6o38A03 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 55.0 | 6.20e-01 | 86.8% | 98.8% |
| 4dnyA00 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.71 | 60.0 | 6.01e-01 | 97.2% | 88.1% |
| 4ml0B00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.59 | 26.0 | 2.84e-01 | 89.6% | 47.8% |
| 4q66A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 30.0 | 3.24e-01 | 83.0% | 63.0% |
| 3bkwB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 40.0 | 3.22e-01 | 84.0% | 88.9% |
| 1xdzA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 40.0 | 3.20e-01 | 88.7% | 69.7% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2581340 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.78 | 60.0 | 6.58e-01 | 91.5% | 97.7% |
| 2581337 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.76 | 62.0 | 6.59e-01 | 91.5% | 97.8% |
| 4286724 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.62 | 53.0 | 3.96e-01 | 95.3% | 62.7% |
| 4663567 | 207.6.1.12 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › Ice_nucleation | 0.61 | 45.0 | 2.82e-01 | 93.4% | 13.7% |
| 4420723 | 1160.1.1.1 ↗ | beta duplicates or obligate multimers › Endoglin orphan region (OR) domain › Endoglin orphan region (OR) domain › Endoglin orphan region (OR) domain › TGFBR3_N | 0.59 | 41.0 | 3.80e-01 | 77.4% | 57.7% |
| 4981578 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 42.0 | 4.23e-01 | 96.2% | 81.0% |