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LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00053
Bact-VirLacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00053
Identity
- Kingdom:
- phage
Quality
84.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-83
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xmjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 42.0 | 4.50e-01 | 90.5% | 69.8% |
| 2l66A00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.66 | 29.0 | 3.44e-01 | 97.3% | 54.7% |
| 3wx4A00 | 3.30.70.2770 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 47.0 | 4.27e-01 | 94.6% | 56.1% |
| 3kkbA00 | 1.20.120.880 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain | 0.65 | 50.0 | 4.18e-01 | 82.4% | 69.0% |
| 2itbB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.62 | 45.0 | 3.34e-01 | 77.0% | 64.1% |
| 5efrA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.62 | 49.0 | 4.93e-01 | 94.6% | 87.7% |
| 2ckoA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.61 | 50.0 | 3.44e-01 | 90.5% | 58.2% |
| 6j09A04 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.61 | 50.0 | 4.95e-01 | 95.9% | 89.6% |
| 4k3bA04 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.61 | 50.0 | 4.93e-01 | 97.3% | 88.5% |
| 4k7cA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.57 | 47.0 | 2.99e-01 | 91.9% | 49.2% |
| 3aa0B01 | 1.20.58.570 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain | 0.56 | 35.0 | 3.35e-01 | 81.1% | 51.1% |
| 3a7kB00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.56 | 49.0 | 3.43e-01 | 100.0% | 80.2% |
| 2qrdE01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.56 | 39.0 | 3.01e-01 | 74.3% | 98.3% |
| 1qr0A01 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.55 | 46.0 | 3.95e-01 | 95.9% | 83.2% |
| 3lxuX01 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.55 | 48.0 | 3.16e-01 | 100.0% | 76.9% |
| 3qf7A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 48.0 | 3.20e-01 | 97.3% | 76.5% |
| 2v0xA01 | 1.10.287.3160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 44.0 | 3.50e-01 | 91.9% | 99.4% |
| 1x0tA02 | 6.20.50.20 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.54 | 27.0 | 3.33e-01 | 97.3% | 77.8% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.54 | 46.0 | 3.29e-01 | 98.6% | 77.4% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 42.0 | 4.15e-01 | 89.2% | 84.1% |
| 3iayA07 | 1.10.132.60 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain | 0.53 | 44.0 | 3.57e-01 | 93.2% | 94.7% |
| 2qg7B01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 37.0 | 3.42e-01 | 78.4% | 54.5% |
| 2qkdA02 | 2.60.120.1040 | Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain | 0.52 | 36.0 | 3.03e-01 | 74.3% | 46.4% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 41.0 | 3.55e-01 | 87.8% | 75.2% |
| 1td6A02 | 3.30.1790.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein mp506/mpn330, domain 2 › hypothetical protein mp506/mpn330, domain 2 | 0.50 | 36.0 | 3.41e-01 | 89.2% | 62.0% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3577937 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.65 | 48.0 | 4.15e-01 | 78.4% | 78.3% |
| 3167450 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.65 | 44.0 | 2.73e-01 | 70.3% | 34.4% |
| 3599428 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.64 | 49.0 | 3.20e-01 | 82.4% | 57.6% |
| 3585584 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.64 | 49.0 | 3.14e-01 | 82.4% | 70.8% |
| 3935000 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.62 | 45.0 | 2.91e-01 | 77.0% | 31.5% |
| 3214019 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.62 | 45.0 | 2.93e-01 | 77.0% | 51.6% |
| None | — | 0.61 | 50.0 | 3.26e-01 | 90.5% | 79.4% | |
| 4994522 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.60 | 43.0 | 3.38e-01 | 100.0% | 35.0% |
| 3648804 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 45.0 | 3.95e-01 | 97.3% | 53.9% |
| 3926712 | 5001.1.1.44 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv | 0.59 | 47.0 | 3.18e-01 | 89.2% | 37.5% |
| 3213842 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.59 | 47.0 | 3.18e-01 | 87.8% | 53.0% |
| 3216326 | 5001.1.1.66 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg | 0.58 | 52.0 | 3.43e-01 | 100.0% | 80.0% |
| 3621671 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.56 | 43.0 | 2.71e-01 | 81.1% | 58.1% |
| 3928731 | 5001.1.1.60 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srx | 0.56 | 43.0 | 2.98e-01 | 87.8% | 39.3% |
| 3930248 | 5001.1.1.44 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv | 0.56 | 44.0 | 2.96e-01 | 87.8% | 36.4% |
| 3238096 | 5001.1.1.66 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg | 0.55 | 47.0 | 3.20e-01 | 95.9% | 84.5% |
| 3221030 | 5001.1.1.66 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg | 0.55 | 49.0 | 3.29e-01 | 100.0% | 82.7% |
| 3216981 | 5001.1.1.66 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg | 0.55 | 48.0 | 3.35e-01 | 100.0% | 82.6% |
| 5016743 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 44.0 | 4.44e-01 | 89.2% | 98.7% |
| 3931007 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.54 | 41.0 | 2.79e-01 | 82.4% | 38.3% |
| 1548765 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.54 | 45.0 | 4.03e-01 | 89.2% | 84.3% |
| 3512028 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.54 | 46.0 | 3.24e-01 | 100.0% | 79.6% |
| 3213933 | 5001.1.1.25 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Sru | 0.54 | 43.0 | 2.89e-01 | 87.8% | 70.0% |
| 3934035 | 5001.1.1.44 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv | 0.54 | 42.0 | 2.94e-01 | 89.2% | 40.4% |
| 3940665 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.53 | 40.0 | 2.90e-01 | 83.8% | 46.7% |
| 3925962 | 5001.1.1.44 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv | 0.53 | 46.0 | 3.12e-01 | 98.6% | 78.3% |
| 3934910 | 5001.1.1.44 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv | 0.52 | 43.0 | 3.09e-01 | 94.6% | 72.2% |
| 3620529 | 5001.1.1.111 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw | 0.51 | 43.0 | 2.79e-01 | 100.0% | 48.8% |
| 3923359 | 5001.1.1.44 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv | 0.51 | 44.0 | 3.02e-01 | 98.6% | 79.3% |
| 3515089 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.51 | 40.0 | 4.15e-01 | 86.5% | 97.1% |
| 3224339 | 5001.1.1.66 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg | 0.50 | 43.0 | 2.95e-01 | 100.0% | 74.3% |
| 4890655 | 5001.1.1.199 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › GPR158_179_EC | 0.50 | 41.0 | 3.52e-01 | 95.9% | 63.4% |