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LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00056
Bact-VirLacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00056
Identity
- Kingdom:
- phage
Quality
60.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 172-255
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 37.0 | 3.93e-01 | 78.6% | 73.6% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 32.0 | 3.56e-01 | 72.6% | 74.6% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.54 | 32.0 | 3.63e-01 | 75.0% | 83.9% |
| 2dy7A00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 36.0 | 3.66e-01 | 70.2% | 74.1% |
| 6iymA02 | 3.90.850.10 | Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain | 0.51 | 44.0 | 3.39e-01 | 100.0% | 96.2% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 29.0 | 3.21e-01 | 73.8% | 69.2% |
| 2krtA01 | 3.10.450.270 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 35.0 | 3.32e-01 | 72.6% | 97.1% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3935906 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.63 | 46.0 | 2.86e-01 | 76.2% | 18.7% |
| 3848485 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.61 | 45.0 | 3.84e-01 | 78.6% | 54.8% |
| 3218545 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.60 | 44.0 | 4.45e-01 | 81.0% | 78.8% |
| 4965032 | 375.1.1.343 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7835 | 0.58 | 35.0 | 4.02e-01 | 70.2% | 89.1% |
| 3792203 | 2.1.1.140 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SURF1 | 0.58 | 39.0 | 3.24e-01 | 70.2% | 40.0% |
| 3460576 | 109.3.1.162 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 | 0.53 | 35.0 | 2.50e-01 | 79.8% | 21.9% |
| 3615475 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.51 | 41.0 | 3.47e-01 | 88.1% | 77.2% |
| 3175156 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.50 | 34.0 | 3.63e-01 | 78.6% | 82.9% |