←Back to structures
LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00093
Bact-VirLacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00093
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-83
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ibcB00 | 3.30.70.1470 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Caspase-like | 0.67 | 42.0 | 4.10e-01 | 97.5% | 56.8% |
| 3c1dB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 47.0 | 5.09e-01 | 89.9% | 93.5% |
| 1tbxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 47.0 | 4.50e-01 | 94.9% | 67.8% |
| 1pfkA02 | 3.40.50.460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphofructokinase domain | 0.62 | 42.0 | 3.60e-01 | 98.7% | 43.7% |
| 3iu0A00 | 3.90.1360.10 | Alpha Beta › Alpha-Beta Complex › Microbial transglutaminase. Chain: a › Protein-glutamine gamma-glutamyltransferase | 0.62 | 46.0 | 3.03e-01 | 92.4% | 17.8% |
| 2gfqA02 | 3.40.50.10700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › AF0625-like | 0.62 | 39.0 | 3.79e-01 | 96.2% | 56.8% |
| 3d5lA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 35.0 | 4.24e-01 | 91.1% | 100.0% |
| 3o9zA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 35.0 | 2.96e-01 | 93.7% | 35.4% |
| 1u6zA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 41.0 | 3.56e-01 | 96.2% | 48.3% |
| 2mc3A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 45.0 | 4.23e-01 | 96.2% | 67.0% |
| 3fd0A01 | 3.90.1150.60 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Methioning gamme-lyase, C-terminal domain | 0.58 | 43.0 | 3.27e-01 | 79.7% | 95.3% |
| 4jdpA02 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.57 | 40.0 | 3.77e-01 | 100.0% | 59.2% |
| 7wbtA02 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.55 | 36.0 | 2.30e-01 | 97.5% | 12.0% |
| 7fc0E01 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.55 | 48.0 | 3.36e-01 | 98.7% | 40.5% |
| 7jt8I02 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.54 | 41.0 | 3.43e-01 | 100.0% | 45.1% |
| 6uqjA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 48.0 | 3.16e-01 | 100.0% | 35.4% |
| 3fxqB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 42.0 | 4.07e-01 | 84.8% | 83.3% |
| 4x28A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.54 | 47.0 | 4.25e-01 | 100.0% | 87.6% |
| 3p01A01 | 6.10.140.590 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 37.0 | 3.64e-01 | 89.9% | 67.5% |
| 6opmD01 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.53 | 37.0 | 2.73e-01 | 75.9% | 79.4% |
| 5af7A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.52 | 45.0 | 4.11e-01 | 100.0% | 90.0% |
| 4hheA02 | 3.40.50.10800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NadA-like | 0.51 | 30.0 | 2.80e-01 | 98.7% | 41.0% |
| 3mdqA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 38.0 | 3.36e-01 | 82.3% | 86.2% |
| 4aweA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 44.0 | 2.87e-01 | 100.0% | 38.3% |
| 1f6kC00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 44.0 | 3.03e-01 | 98.7% | 34.0% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3927799 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.66 | 44.0 | 4.60e-01 | 78.5% | 77.1% |
| 4946238 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 43.0 | 3.07e-01 | 94.9% | 22.5% |
| 4351028 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.64 | 41.0 | 3.00e-01 | 94.9% | 25.0% |
| 4022146 | 101.1.2.520 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7779 | 0.62 | 44.0 | 4.16e-01 | 96.2% | 61.0% |
| 3188224 | 2003.1.1.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA | 0.60 | 39.0 | 3.05e-01 | 98.7% | 29.4% |
| 3631497 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.58 | 42.0 | 4.17e-01 | 81.0% | 71.8% |
| 3658230 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.58 | 40.0 | 3.03e-01 | 97.5% | 27.4% |
| 5077380 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.57 | 42.0 | 3.70e-01 | 96.2% | 53.0% |
| 4297810 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.57 | 44.0 | 4.23e-01 | 83.5% | 83.3% |
| 5049442 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.57 | 44.0 | 4.23e-01 | 83.5% | 83.3% |
| 5042767 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 46.0 | 4.29e-01 | 89.9% | 83.7% |
| 3644379 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.55 | 43.0 | 3.38e-01 | 100.0% | 37.8% |
| 5022789 | 2003.1.5.444 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF1156 | 0.55 | 44.0 | 2.86e-01 | 89.9% | 19.2% |
| 3983672 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.55 | 40.0 | 3.10e-01 | 100.0% | 33.5% |
| 3680038 | 2005.1.1.43 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_2nd | 0.55 | 40.0 | 3.14e-01 | 98.7% | 33.7% |
| 3643262 | 2005.1.1.43 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_2nd | 0.53 | 39.0 | 3.17e-01 | 100.0% | 38.2% |
| 2429326 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.53 | 39.0 | 3.00e-01 | 98.7% | 32.3% |
| 3838276 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.53 | 45.0 | 3.41e-01 | 93.7% | 61.1% |
| 3961833 | 4033.1.1.1 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N | 0.52 | 45.0 | 3.95e-01 | 100.0% | 71.2% |
| 4121234 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 41.0 | 4.05e-01 | 89.9% | 88.2% |
| 4938037 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.51 | 39.0 | 3.59e-01 | 82.3% | 93.3% |
| 3796251 | 7577.1.1.3 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_5 | 0.50 | 38.0 | 2.85e-01 | 82.3% | 56.2% |
| 4963809 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.50 | 37.0 | 2.56e-01 | 79.7% | 50.7% |