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LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00173

Bact-Vir

LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00173

Identity

Kingdom:
phage

Quality

90.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-152
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bt2A02 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.54 33.0 3.49e-01 100.0% 66.7%
1xv2D02 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.54 33.0 3.49e-01 100.0% 66.7%
5yhoA02 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.54 32.0 3.43e-01 100.0% 66.7%
3tiiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.54 22.0 3.02e-01 95.0% 75.4%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.52 25.0 3.19e-01 99.3% 75.9%
2hv2A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 30.0 3.49e-01 93.6% 82.1%
1w7cA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 31.0 3.39e-01 96.5% 73.5%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3410496 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.68 22.0 3.77e-01 92.9% 85.4%
3627027 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 18.0 2.91e-01 85.8% 90.0%
3233799 375.1.1.146 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CCCH_Mcm10 0.53 18.0 2.88e-01 85.8% 90.0%
3631696 4111.1.1.1 a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AAL_decarboxy 0.53 32.0 3.50e-01 100.0% 73.6%
3687614 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 29.0 3.58e-01 100.0% 85.6%
5023508 275.1.1.5 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › Arc_PepC 0.52 24.0 2.98e-01 90.8% 68.2%
3549475 4.1.1.302 beta barrels › SH3 › SH3 › SH3 › tSH3-B_UBE2O 0.51 31.0 3.69e-01 100.0% 90.5%
D2 high residues 154-221
PDB
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6p3qA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.72 64.0 4.89e-01 100.0% 85.4%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 56.0 5.79e-01 95.6% 100.0%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 55.0 5.72e-01 98.5% 100.0%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 55.0 5.62e-01 98.5% 95.5%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 4.33e-01 89.7% 98.5%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 54.0 5.56e-01 98.5% 100.0%
3m1uA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.65 59.0 4.33e-01 100.0% 53.2%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 53.0 4.51e-01 97.1% 59.0%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 55.0 4.09e-01 98.5% 49.7%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 55.0 5.40e-01 100.0% 98.6%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 46.0 4.75e-01 79.4% 84.8%
2bujB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 46.0 4.16e-01 80.9% 83.0%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 5.07e-01 98.5% 93.8%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 51.0 5.17e-01 98.5% 94.2%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 53.0 5.01e-01 98.5% 83.7%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.41e-01 91.2% 86.5%
1s3iA02 3.10.25.10 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain 0.59 44.0 3.96e-01 82.4% 90.2%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.27e-01 95.6% 62.0%
4hntA04 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.58 46.0 4.10e-01 88.2% 84.2%
2i5hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 39.0 3.91e-01 72.1% 88.9%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 4.78e-01 92.6% 93.8%
5yhhA00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.57 51.0 3.67e-01 100.0% 75.9%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 38.0 3.84e-01 77.9% 70.1%
3x2xA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 43.0 3.06e-01 85.3% 30.4%
1u04A02 3.90.70.180 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 47.0 4.06e-01 97.1% 100.0%
3p26A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 48.0 4.14e-01 98.5% 79.1%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 47.0 4.61e-01 97.1% 90.7%
1o67C00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.55 49.0 3.50e-01 100.0% 68.1%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 43.0 4.55e-01 83.8% 98.3%
1lmiA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 44.0 3.69e-01 94.1% 95.4%
2zylA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.54 45.0 3.28e-01 97.1% 62.2%
2f9hA00 2.40.33.40 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › Phosphotransferase system, glucitol/sorbitol-specific IIA component 0.54 48.0 3.98e-01 100.0% 66.1%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 41.0 4.31e-01 85.3% 100.0%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 42.0 2.93e-01 91.2% 44.2%
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 39.0 2.60e-01 82.4% 28.2%
3t2lA02 2.60.40.2630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 41.0 3.28e-01 86.8% 87.7%
3tqqA02 3.10.25.10 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain 0.52 42.0 3.73e-01 94.1% 94.3%
7qi3A01 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.50 40.0 2.68e-01 92.6% 34.4%
7jptA01 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.50 40.0 3.36e-01 89.7% 82.9%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4931822 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 55.0 5.66e-01 95.6% 83.1%
4101580 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 59.0 6.03e-01 95.6% 95.4%
3590827 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 60.0 6.11e-01 98.5% 96.9%
3513137 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 51.0 4.34e-01 76.5% 72.7%
3306779 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 58.0 5.95e-01 98.5% 96.9%
3981045 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.69 62.0 4.71e-01 100.0% 57.9%
4041586 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 58.0 5.93e-01 98.5% 96.9%
4419948 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 56.0 5.70e-01 94.1% 93.8%
3842361 1.1.5.76 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.68 60.0 5.40e-01 100.0% 93.7%
3770802 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.68 60.0 5.27e-01 100.0% 94.1%
4284764 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 57.0 5.81e-01 100.0% 96.9%
3223487 219.1.1.94 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › ACTMAP-like_C 0.67 57.0 4.02e-01 95.6% 55.5%
3950208 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 56.0 5.79e-01 98.5% 98.5%
4201878 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 56.0 5.75e-01 98.5% 98.5%
4037383 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 55.0 5.66e-01 98.5% 96.9%
3599172 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 55.0 5.67e-01 98.5% 96.9%
4086925 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 54.0 5.51e-01 95.6% 93.8%
3948467 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 56.0 5.77e-01 98.5% 100.0%
3265170 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 55.0 5.66e-01 98.5% 96.9%
142633 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 55.0 5.62e-01 98.5% 95.5%
3608236 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 55.0 5.60e-01 98.5% 96.9%
3739064 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 56.0 5.80e-01 95.6% 98.5%
4077367 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 55.0 5.66e-01 95.6% 98.5%
5063537 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 49.0 5.15e-01 98.5% 91.7%
4038269 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 55.0 5.59e-01 98.5% 98.5%
4028885 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 55.0 5.67e-01 98.5% 98.5%
3422852 4.1.1.85 beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.65 51.0 4.17e-01 85.3% 74.4%
4146937 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 54.0 5.49e-01 98.5% 98.5%
4051625 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 54.0 5.52e-01 98.5% 98.5%
4524363 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 54.0 5.50e-01 98.5% 96.9%
1144815 4.1.1.103 beta barrels › SH3 › SH3 › SH3 › SH3_12 0.64 56.0 5.39e-01 100.0% 96.2%
4946993 4.1.1.479 beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.63 54.0 5.39e-01 98.5% 92.9%
5057186 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 57.0 5.16e-01 100.0% 95.6%
4990359 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.63 48.0 4.89e-01 98.5% 86.2%
3170251 4.1.1.170 beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.62 55.0 4.37e-01 100.0% 79.3%
3937478 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 54.0 4.64e-01 98.5% 79.1%
5065626 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.62 44.0 4.03e-01 75.0% 90.0%
3643549 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.62 52.0 4.93e-01 97.1% 80.0%
3871359 4.8.1.48 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › tSH3-B_UBE2O 0.61 49.0 4.14e-01 91.2% 95.8%
1826911 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 51.0 4.78e-01 95.6% 97.7%
4970369 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.59 44.0 4.43e-01 88.2% 78.6%
4943872 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.58 49.0 3.99e-01 98.5% 98.6%
3453083 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 51.0 4.53e-01 100.0% 96.0%
4902667 1.1.5.18 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 0.57 40.0 3.04e-01 76.5% 67.9%
5049999 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.57 43.0 4.26e-01 88.2% 80.0%
3627688 4.1.1.319 beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.56 46.0 3.78e-01 100.0% 76.7%
5029179 5090.1.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.56 47.0 4.05e-01 94.1% 89.1%
4976896 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.56 48.0 4.36e-01 98.5% 73.7%
4508593 270.1.1.2 beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C 0.55 45.0 3.92e-01 95.6% 91.3%
3954203 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.55 45.0 4.38e-01 91.2% 89.3%
5029643 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.55 47.0 4.54e-01 98.5% 88.7%
3804237 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.54 43.0 2.77e-01 88.2% 22.0%
3607355 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.54 40.0 3.07e-01 82.4% 44.0%
4965032 375.1.1.343 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7835 0.53 38.0 4.13e-01 76.5% 96.4%
4025696 247.1.1.11 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.53 40.0 2.70e-01 85.3% 24.7%
4957569 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.52 37.0 3.39e-01 76.5% 80.0%
3817641 376.1.2.16 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT 0.52 39.0 4.20e-01 80.9% 100.0%
3813307 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.52 39.0 2.53e-01 82.4% 25.1%
3509507 2004.1.1.433 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.50 43.0 2.71e-01 100.0% 57.8%