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LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00195
Bact-VirLacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00195
Identity
- Kingdom:
- phage
Quality
77.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-52
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5x8rr00 | 4.10.640.10 | Few Secondary Structures › Irregular › 30s Ribosomal Protein S18 › Ribosomal protein S18 | 0.76 | 54.0 | 4.79e-01 | 88.9% | 53.1% |
| 1q16B01 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 54.0 | 3.71e-01 | 88.9% | 42.6% |
| 2rcnA03 | 1.10.40.50 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Probable gtpase engc; domain 3 | 0.66 | 49.0 | 4.44e-01 | 82.2% | 62.9% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.62 | 50.0 | 4.10e-01 | 91.1% | 47.7% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3864857 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.75 | 58.0 | 4.06e-01 | 86.7% | 27.1% |
| 3263441 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.73 | 51.0 | 5.38e-01 | 75.6% | 100.0% |
| 5062002 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.69 | 52.0 | 3.11e-01 | 80.0% | 89.0% |
| 4955481 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.67 | 52.0 | 4.76e-01 | 86.7% | 83.3% |
| 3754619 | 906.1.1.1 ↗ | few secondary structure elements › CCCH zinc finger › CCCH zinc finger › CCCH zinc finger › zf-CCCH | 0.63 | 45.0 | 4.28e-01 | 77.8% | 98.2% |
| 4946702 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.60 | 51.0 | 3.09e-01 | 100.0% | 63.3% |
| 3592580 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.56 | 49.0 | 4.51e-01 | 100.0% | 98.3% |
| 4947601 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.56 | 49.0 | 2.98e-01 | 100.0% | 76.4% |
| 3438935 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.55 | 48.0 | 3.36e-01 | 100.0% | 44.1% |